Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   PHA78_RS06995 Genome accession   NZ_CP116604
Coordinates   1457385..1458326 (-) Length   313 a.a.
NCBI ID   WP_024419202.1    Uniprot ID   -
Organism   Streptococcus sp. HN38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1452385..1463326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHA78_RS06970 prsA 1452492..1453493 (-) 1002 WP_044689579.1 peptidylprolyl isomerase PrsA -
  PHA78_RS06975 - 1453556..1454275 (-) 720 WP_099871916.1 O-methyltransferase -
  PHA78_RS06980 - 1454350..1454898 (-) 549 WP_099871888.1 DUF6630 family protein -
  PHA78_RS06985 - 1454909..1455352 (-) 444 WP_104929425.1 hypothetical protein -
  PHA78_RS06990 pepF 1455354..1457156 (-) 1803 WP_272157882.1 oligoendopeptidase F Regulator
  PHA78_RS06995 coiA 1457385..1458326 (-) 942 WP_024419202.1 competence protein CoiA family protein Machinery gene
  PHA78_RS07000 - 1458387..1458953 (+) 567 WP_272157883.1 GNAT family protein -
  PHA78_RS07005 metG 1458983..1460986 (-) 2004 WP_272157884.1 methionine--tRNA ligase -
  PHA78_RS07010 - 1461192..1461941 (-) 750 WP_024377234.1 hypothetical protein -
  PHA78_RS07015 - 1462023..1462634 (-) 612 WP_272157885.1 DUF3885 domain-containing protein -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36356.20 Da        Isoelectric Point: 8.7661

>NTDB_id=778770 PHA78_RS06995 WP_024419202.1 1457385..1458326(-) (coiA) [Streptococcus sp. HN38]
MLVALDEDGQVFNVLENPAPQGRYSCPGCGGPVRYKSGKVLRSHFAHVTLRDCHYFSENESAQHLSLKSCLYSWLIKAEQ
VDLEKCLPQIGQIADLLVNDHLVVEVQCSSLPISRLQARTKAYHEAGFQVLWLLGKGLWIKERLSKLHKQFLSFSMNMGF
YIWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLEILRLPFAKQALSHLTCPLDRDLPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIKQDLTPIYQAFDLFYDKAKDKRKQILYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=778770 PHA78_RS06995 WP_024419202.1 1457385..1458326(-) (coiA) [Streptococcus sp. HN38]
ATGTTAGTTGCACTTGATGAAGATGGGCAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGTCGCTATTCCTGTCC
AGGTTGTGGAGGACCTGTCCGATACAAATCTGGAAAAGTTCTGCGTTCGCACTTTGCCCATGTAACCCTGCGGGACTGCC
ACTATTTTTCCGAGAATGAGTCAGCCCAGCACCTGTCACTTAAGTCTTGTCTGTACAGTTGGTTAATCAAAGCCGAACAA
GTTGACCTTGAAAAATGCCTGCCACAGATTGGTCAGATAGCGGATTTATTGGTCAATGATCATTTGGTTGTGGAAGTCCA
ATGTTCCAGTCTGCCCATTTCACGCTTGCAGGCGAGAACAAAAGCCTATCATGAAGCTGGTTTTCAGGTTCTCTGGCTGT
TGGGAAAAGGCCTATGGATAAAAGAAAGATTAAGTAAATTACATAAGCAATTTCTCTCTTTTAGTATGAACATGGGTTTC
TACATTTGGGAGTTGGATGACGAGAAGAAGGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGAAATCTTGCGTCTGCCTTTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTA
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTATCCCCACATCCGTCT
ACCCCGCTCTGCCATTGGCTTTGCCCAAATCAAGCAAGACCTGACACCGATTTACCAAGCATTTGATCTGTTTTACGACA
AAGCAAAAGATAAGAGAAAACAAATCTTGTATCCACCTATCATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

53.205

99.681

0.53
  coiA Streptococcus pneumoniae TIGR4

51.603

99.681

0.514
  coiA Streptococcus pneumoniae Rx1

51.603

99.681

0.514
  coiA Streptococcus pneumoniae D39

51.603

99.681

0.514
  coiA Streptococcus pneumoniae R6

51.603

99.681

0.514
  coiA Lactococcus lactis subsp. cremoris KW2

41.562

100

0.425