Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   PHA78_RS06990 Genome accession   NZ_CP116604
Coordinates   1455354..1457156 (-) Length   600 a.a.
NCBI ID   WP_272157882.1    Uniprot ID   -
Organism   Streptococcus sp. HN38     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1450354..1462156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHA78_RS06965 - 1451645..1452130 (-) 486 WP_004299022.1 LURP-one-related family protein -
  PHA78_RS06970 prsA 1452492..1453493 (-) 1002 WP_044689579.1 peptidylprolyl isomerase PrsA -
  PHA78_RS06975 - 1453556..1454275 (-) 720 WP_099871916.1 O-methyltransferase -
  PHA78_RS06980 - 1454350..1454898 (-) 549 WP_099871888.1 DUF6630 family protein -
  PHA78_RS06985 - 1454909..1455352 (-) 444 WP_104929425.1 hypothetical protein -
  PHA78_RS06990 pepF 1455354..1457156 (-) 1803 WP_272157882.1 oligoendopeptidase F Regulator
  PHA78_RS06995 coiA 1457385..1458326 (-) 942 WP_024419202.1 competence protein CoiA family protein Machinery gene
  PHA78_RS07000 - 1458387..1458953 (+) 567 WP_272157883.1 GNAT family protein -
  PHA78_RS07005 metG 1458983..1460986 (-) 2004 WP_272157884.1 methionine--tRNA ligase -
  PHA78_RS07010 - 1461192..1461941 (-) 750 WP_024377234.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69080.31 Da        Isoelectric Point: 4.5553

>NTDB_id=778769 PHA78_RS06990 WP_272157882.1 1455354..1457156(-) (pepF) [Streptococcus sp. HN38]
MSKQRHEIEEKYQWDLTTVFPTDDAWEAELVDLQAETEKTKEFAGHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYAAFSQAFAFYEPEFMAITEEQLEAFKAEEPALVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASILFPEIADEDGHLVPLSHGNYINFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYIKLRKKLLGIEDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=778769 PHA78_RS06990 WP_272157882.1 1455354..1457156(-) (pepF) [Streptococcus sp. HN38]
ATGTCTAAACAACGTCATGAAATTGAAGAAAAATACCAGTGGGACTTGACCACTGTTTTCCCAACCGATGATGCCTGGGA
GGCAGAACTTGTAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTGCTGGACTCAGCTAAAAGTC
TCTTAGAAATTAGCGAAACGCAACTCGGTCTCATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGTGAAGGCAAATATCAGGAATTTCAAGCTAAGGCCATGGGCTTGTATGCTGCCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAGCTGGAGGCCTTTAAGGCAGAAGAGCCTGCTCTTGTTCAGT
ACAGCCATCAATTTGAAAAACTCTTAGCAGCTAAGGATCATGTCTTGTCACAGGAAGTAGAAGAAGTCCTTGCGGCGACC
AGCGAGATTTTTGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCAAGTATCTTATTCCCTGAAATTGCAGACGA
GGATGGTCATTTAGTACCACTCTCTCACGGCAATTATATTAACTTCATGGAGTCTAAAAACCGCGACGTCCGCCAAGAAG
CATACGAAGCAATGTACGGTACCTACGAGCAGTTCCAGCATACCTACGCTAAGACTTTGCAGTCTAATGTCAAGGTCAAT
AACCTAAAAGCTCGTTTGCGTAAGTACGATTCAGCCCGTCACGCATCACTTGCAGCCAATTTTATCCCAGAGTCTGTTTA
CGATACATTAGTGGCGGCTGTTAACAAGCACCTTCCGCTCCTGCACCGTTATATCAAGTTGCGTAAGAAACTCTTGGGTA
TTGAGGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTCAGCACCAAGATTTCTTATGAAGATGCACTCAAG
AAATGCCAAGAAACCTTGGAAATCTTCGGTGAGGACTATTCAGCTATTGTGAAGGAGGCCTTCGAAAACCGCTGGATTGA
TGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATACTCAGGAGGCGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAACTTGGATAATATGTACACCCTTATCCATGAAACAGGGCATTCTCTTCACTCTATGTTGACTCGTAAGACT
CAACCCTATGTCTACGGTCATTATTCCCTCTTCTTGGCAGAAATTGCTTCAACAACCAATGAAAATCTTTTGACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGATAAGGAACGCTTTGCTATTCTTAACCATTACCTAGATGGTTTCCGTGGTACAGTCT
TCCGCCAGACCCAATTTGCTGAGTTTGAACAAGCTATCTATAAGGCAGATCAGGAAGGTCAGGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACTAACGAGAAATACTACGGACTTTCTGCCGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACATTTCTATTACAATTTCTATGTTTACCAATACGCGACAGGTTTTGCGGCAGCATCAGCTCTAGCAA
ATAAGATTGTCAATGGTAGCCCAGAAGACAAAGAAAACTATCTCAACTATTTGAAAGCAGGTAGCTCAGATTACTCCCTC
AATGTCATCGCTAAGGCTGGCGTAGACATGACCAAGGAAGATTACCTCAACGATGCCTTCAAGGTCTTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.667

100

0.697