Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   PHA78_RS02370 Genome accession   NZ_CP116604
Coordinates   479243..479908 (+) Length   221 a.a.
NCBI ID   WP_024377224.1    Uniprot ID   -
Organism   Streptococcus sp. HN38     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 474243..484908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHA78_RS02345 - 474454..475854 (+) 1401 WP_029173958.1 Cof-type HAD-IIB family hydrolase -
  PHA78_RS02350 - 475856..476227 (+) 372 WP_002937017.1 S1 RNA-binding domain-containing protein -
  PHA78_RS02355 cysK 476254..477180 (-) 927 WP_029173960.1 cysteine synthase A -
  PHA78_RS02360 - 477269..477901 (-) 633 WP_272158415.1 YigZ family protein -
  PHA78_RS02365 comFA/cflA 477958..479250 (+) 1293 WP_024377223.1 DEAD/DEAH box helicase Machinery gene
  PHA78_RS02370 comFC/cflB 479243..479908 (+) 666 WP_024377224.1 ComF family protein Machinery gene
  PHA78_RS02375 raiA 479986..480528 (+) 543 WP_014637536.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25736.54 Da        Isoelectric Point: 8.6258

>NTDB_id=778758 PHA78_RS02370 WP_024377224.1 479243..479908(+) (comFC/cflB) [Streptococcus sp. HN38]
MSNCLLCGQAMKNKTRFSDLIFFSKEKSGTCEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYRYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLSATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=778758 PHA78_RS02370 WP_024377224.1 479243..479908(+) (comFC/cflB) [Streptococcus sp. HN38]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCACTTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCGATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAGTGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae D39

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae R6

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484