Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MWM16_RS09355 Genome accession   NZ_AP025617
Coordinates   1713776..1714960 (-) Length   394 a.a.
NCBI ID   WP_244344497.1    Uniprot ID   -
Organism   Thermus thermophilus strain SNM7-6     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1708776..1719960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM16_RS09330 (TthSNM76_18320) fabZ 1709001..1709429 (-) 429 WP_011173839.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MWM16_RS09335 (TthSNM76_18330) - 1709436..1710473 (-) 1038 WP_011173840.1 rod shape-determining protein -
  MWM16_RS09340 (TthSNM76_18340) rny 1710485..1712209 (-) 1725 WP_244344493.1 ribonuclease Y -
  MWM16_RS09345 (TthSNM76_18350) recA 1712210..1713232 (-) 1023 WP_244344494.1 recombinase RecA Machinery gene
  MWM16_RS09350 (TthSNM76_18360) thpR 1713183..1713779 (-) 597 WP_244344495.1 RNA 2',3'-cyclic phosphodiesterase -
  MWM16_RS09355 (TthSNM76_18370) cinA 1713776..1714960 (-) 1185 WP_244344497.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  MWM16_RS09360 (TthSNM76_18380) - 1714933..1715709 (-) 777 WP_244344499.1 glycine cleavage system protein T -
  MWM16_RS09365 (TthSNM76_18390) - 1715749..1716798 (+) 1050 WP_011173846.1 MFS transporter -
  MWM16_RS09370 (TthSNM76_18400) - 1716791..1717417 (+) 627 WP_223965757.1 HAD family phosphatase -
  MWM16_RS09375 (TthSNM76_18410) - 1717403..1718488 (-) 1086 WP_244344501.1 enolase C-terminal domain-like protein -
  MWM16_RS09380 (TthSNM76_18420) - 1718506..1719219 (-) 714 WP_244344503.1 AAA family ATPase -
  MWM16_RS09385 (TthSNM76_18430) - 1719252..1719749 (+) 498 WP_244344505.1 bioflim formation protein -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 42943.42 Da        Isoelectric Point: 8.2417

>NTDB_id=77828 MWM16_RS09355 WP_244344497.1 1713776..1714960(-) (cinA) [Thermus thermophilus strain SNM7-6]
MERAEILGVGTELLYGETLDTNTAEIARSLKPYALKVERTLRVADGVAPLAREVEEAFARARLVVLSGGLGPTPDDVTRE
AVALALGEPLELDEAVLGEIEAFFRARGRAMPEANRKQAMRIPSATWLKNPRGTAPGWWVRKGGKDLVLLPGPPPEWRPM
WQEVLPRLGLPRRPYAERVLKTWGIGESEIVERLGPLFVREEEVEVGTYPKVHGVEVVVRGREDRVAELAERIKKRLLKE
VWGEGEMTLAEAVKRRMEREGATLSTMESLTGGLLGAEITRVPGASRFYLGGVVSYSVGAKARFGVPQDLLSRTVSAETA
RAMAEAARSLFGSTYALATTGVAGPDPLEGEPPGTVYVALAGPTGAEVRRYRFPGDRETVRLRSVYAALALLVT

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=77828 MWM16_RS09355 WP_244344497.1 1713776..1714960(-) (cinA) [Thermus thermophilus strain SNM7-6]
ATGGAGCGGGCAGAGATCCTCGGGGTAGGTACCGAGCTCCTCTACGGGGAGACCCTGGACACCAACACGGCGGAGATCGC
AAGAAGCCTCAAGCCCTACGCCCTCAAGGTGGAGAGGACCCTGAGGGTGGCGGACGGGGTGGCGCCCCTGGCCCGGGAGG
TGGAGGAGGCCTTCGCCCGGGCCAGGCTTGTGGTCCTCTCCGGCGGCCTCGGCCCCACCCCGGACGACGTGACCCGGGAG
GCGGTGGCCCTGGCCTTGGGGGAGCCTTTGGAGCTGGACGAGGCCGTGCTTGGGGAGATTGAGGCCTTCTTCCGCGCCCG
GGGGCGGGCCATGCCCGAGGCCAACCGCAAGCAGGCCATGCGGATCCCCTCCGCCACCTGGCTCAAAAACCCCCGGGGCA
CCGCCCCCGGGTGGTGGGTGCGCAAAGGGGGCAAGGACCTGGTCCTCCTCCCCGGGCCCCCTCCCGAGTGGCGCCCTATG
TGGCAGGAGGTCCTGCCCCGCCTGGGCCTGCCGCGAAGGCCCTACGCCGAAAGGGTCTTGAAGACCTGGGGCATCGGGGA
GTCGGAGATCGTGGAGCGGCTTGGCCCCCTCTTCGTCCGGGAAGAGGAGGTGGAGGTGGGCACCTACCCCAAGGTCCACG
GGGTGGAGGTGGTGGTCCGGGGCCGGGAGGACCGGGTGGCGGAGCTCGCCGAGCGGATCAAGAAAAGGCTTCTTAAGGAG
GTCTGGGGCGAGGGGGAGATGACCCTCGCCGAGGCGGTGAAGAGGCGCATGGAGCGGGAGGGGGCCACCCTTTCCACCAT
GGAGAGCCTCACCGGGGGGCTTCTGGGGGCGGAGATCACCCGCGTGCCGGGGGCGAGCCGCTTCTACTTGGGGGGCGTGG
TATCCTACTCCGTAGGGGCCAAGGCCCGCTTCGGGGTGCCTCAGGACCTCCTCTCCCGGACGGTCTCCGCCGAGACCGCC
CGGGCTATGGCGGAGGCGGCGCGGTCCCTCTTCGGGTCCACCTACGCCCTGGCCACCACCGGGGTCGCGGGGCCGGACCC
CCTGGAGGGAGAGCCCCCGGGCACGGTCTACGTGGCCCTGGCGGGCCCCACGGGCGCGGAGGTGCGGCGCTACCGCTTCC
CGGGAGACCGGGAGACCGTGCGCCTAAGAAGCGTCTACGCGGCTTTGGCGCTCCTTGTGACATGA

Domains

Predicted by InterProScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-168)

Competence-damaged protein (CinA)

(248-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

35.351

100

0.371
  cinA Streptococcus mitis SK321

35.109

100

0.368
  cinA Streptococcus pneumoniae TIGR4

35.109

100

0.368
  cinA Streptococcus pneumoniae R36A

34.867

100

0.365
  cinA Streptococcus pneumoniae Rx1

34.867

100

0.365
  cinA Streptococcus pneumoniae R6

34.867

100

0.365
  cinA Streptococcus pneumoniae D39

34.625

100

0.363

Multiple sequence alignment