Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   BV189_RS02500 Genome accession   NZ_CP116489
Coordinates   512133..512546 (-) Length   137 a.a.
NCBI ID   WP_011272047.1    Uniprot ID   Q4QNA9
Organism   Haemophilus influenzae strain 93P28H1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 507133..517546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV189_RS02470 (BV189_0506) - 507519..507791 (-) 273 WP_105893545.1 HU family DNA-binding protein -
  BV189_RS02475 (BV189_0507) - 507929..508519 (-) 591 WP_105893546.1 YjaG family protein -
  BV189_RS02480 (BV189_0508) nudC 508555..509349 (-) 795 WP_105893547.1 NAD(+) diphosphatase -
  BV189_RS02485 (BV189_0509) nfuA 509416..510012 (-) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -
  BV189_RS02490 (BV189_0510) - 510087..510773 (-) 687 WP_011272045.1 ComF family protein -
  BV189_RS02495 (BV189_0511) comE 510786..512123 (-) 1338 WP_011272046.1 type IV pilus secretin PilQ Machinery gene
  BV189_RS02500 (BV189_0512) comD 512133..512546 (-) 414 WP_011272047.1 pilus assembly protein PilP Machinery gene
  BV189_RS02505 (BV189_0513) comC 512543..513064 (-) 522 WP_105893548.1 competence protein ComC Machinery gene
  BV189_RS02510 (BV189_0514) comB 513061..513567 (-) 507 WP_105893549.1 competence protein B Machinery gene
  BV189_RS02515 (BV189_0515) comA 513568..514365 (-) 798 WP_105893550.1 competence protein ComA Machinery gene
  BV189_RS02520 (BV189_0516) - 514464..517064 (+) 2601 WP_105893551.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15695.85 Da        Isoelectric Point: 4.5625

>NTDB_id=777537 BV189_RS02500 WP_011272047.1 512133..512546(-) (comD) [Haemophilus influenzae strain 93P28H1]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=777537 BV189_RS02500 WP_011272047.1 512133..512546(-) (comD) [Haemophilus influenzae strain 93P28H1]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QNA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Haemophilus influenzae 86-028NP

100

100

1
  comD Haemophilus influenzae Rd KW20

99.27

100

0.993