Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QU831_RS15215 Genome accession   NZ_CP129240
Coordinates   3005752..3006357 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 1344_LBHALD     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3000752..3011357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU831_RS15180 (QU831_15180) - 3001306..3001404 (+) 99 Protein_2977 hypothetical protein -
  QU831_RS15185 (QU831_15185) rsmS 3001457..3001618 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  QU831_RS15190 (QU831_15190) priC 3001632..3002159 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  QU831_RS15195 (QU831_15195) ybaN 3002229..3002606 (+) 378 WP_001188905.1 DUF454 family protein -
  QU831_RS15200 (QU831_15200) apt 3002759..3003310 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QU831_RS15205 (QU831_15205) dnaX 3003439..3005370 (+) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  QU831_RS15210 (QU831_15210) ybaB 3005423..3005752 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QU831_RS15215 (QU831_15215) recR 3005752..3006357 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QU831_RS15220 (QU831_15220) htpG 3006467..3008341 (+) 1875 WP_000678213.1 molecular chaperone HtpG -
  QU831_RS15225 (QU831_15225) adk 3008522..3009166 (+) 645 WP_001220233.1 adenylate kinase -
  QU831_RS15230 (QU831_15230) hemH 3009402..3010364 (+) 963 WP_001250088.1 ferrochelatase -
  QU831_RS15235 (QU831_15235) aes 3010361..3011320 (-) 960 WP_000801846.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=777536 QU831_RS15215 WP_001195025.1 3005752..3006357(+) (recR) [Escherichia coli strain 1344_LBHALD]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=777536 QU831_RS15215 WP_001195025.1 3005752..3006357(+) (recR) [Escherichia coli strain 1344_LBHALD]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443