Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   BV189_RS02510 Genome accession   NZ_CP116489
Coordinates   513061..513567 (-) Length   168 a.a.
NCBI ID   WP_105893549.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 93P28H1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 508061..518567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV189_RS02480 (BV189_0508) nudC 508555..509349 (-) 795 WP_105893547.1 NAD(+) diphosphatase -
  BV189_RS02485 (BV189_0509) nfuA 509416..510012 (-) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -
  BV189_RS02490 (BV189_0510) - 510087..510773 (-) 687 WP_011272045.1 ComF family protein -
  BV189_RS02495 (BV189_0511) comE 510786..512123 (-) 1338 WP_011272046.1 type IV pilus secretin PilQ Machinery gene
  BV189_RS02500 (BV189_0512) comD 512133..512546 (-) 414 WP_011272047.1 pilus assembly protein PilP Machinery gene
  BV189_RS02505 (BV189_0513) comC 512543..513064 (-) 522 WP_105893548.1 competence protein ComC Machinery gene
  BV189_RS02510 (BV189_0514) comB 513061..513567 (-) 507 WP_105893549.1 competence protein B Machinery gene
  BV189_RS02515 (BV189_0515) comA 513568..514365 (-) 798 WP_105893550.1 competence protein ComA Machinery gene
  BV189_RS02520 (BV189_0516) - 514464..517064 (+) 2601 WP_105893551.1 penicillin-binding protein 1A -
  BV189_RS02525 (BV189_0517) - 517137..517982 (+) 846 WP_011961682.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  BV189_RS02530 (BV189_0518) - 518135..518464 (+) 330 WP_011961681.1 YbaB/EbfC family nucleoid-associated protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19881.69 Da        Isoelectric Point: 9.5661

>NTDB_id=777539 BV189_RS02510 WP_105893549.1 513061..513567(-) (comB) [Haemophilus influenzae strain 93P28H1]
MSMNLLPWRIYQHQKRLRRLVFYFALFILLTINLALAFSHLIEQQKQNSQAQQKSFEQLNQQLHKTATQIDLLRSAVKVG
EVLQPLTNEQVQNSLQRLSELPLQKGELNRFKQDAHNLSLEGRAQDQTEFESVHQFLNKHFPNVKLSQVQPEQHTLFFRF
DMEQGEEK

Nucleotide


Download         Length: 507 bp        

>NTDB_id=777539 BV189_RS02510 WP_105893549.1 513061..513567(-) (comB) [Haemophilus influenzae strain 93P28H1]
ATGTCGATGAATTTATTGCCTTGGCGTATTTATCAACATCAAAAGCGTTTACGTCGTTTAGTTTTTTATTTCGCTTTATT
TATCTTACTTACAATCAATTTAGCCTTGGCTTTTAGCCATTTGATTGAACAACAGAAACAAAATTCGCAGGCGCAGCAAA
AGTCGTTTGAACAACTTAATCAGCAACTTCACAAAACTGCCACGCAAATTGATCTGTTACGTAGTGCGGTGAAAGTTGGT
GAAGTTTTACAACCTCTCACGAATGAGCAAGTCCAAAATAGTTTGCAGCGATTAAGTGAATTACCTCTTCAGAAAGGCGA
ATTAAACCGATTTAAACAAGATGCCCATAACTTAAGTTTGGAAGGTCGAGCACAAGATCAAACAGAATTTGAATCGGTAC
ATCAATTTTTAAATAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAGCCTGAACAACATACATTGTTTTTTCGCTTT
GATATGGAACAAGGAGAGGAAAAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

82.143

100

0.821
  comB Haemophilus influenzae Rd KW20

82.143

100

0.821