Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BV189_RS02505 Genome accession   NZ_CP116489
Coordinates   512543..513064 (-) Length   173 a.a.
NCBI ID   WP_105893548.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 93P28H1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 507543..518064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV189_RS02475 (BV189_0507) - 507929..508519 (-) 591 WP_105893546.1 YjaG family protein -
  BV189_RS02480 (BV189_0508) nudC 508555..509349 (-) 795 WP_105893547.1 NAD(+) diphosphatase -
  BV189_RS02485 (BV189_0509) nfuA 509416..510012 (-) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -
  BV189_RS02490 (BV189_0510) - 510087..510773 (-) 687 WP_011272045.1 ComF family protein -
  BV189_RS02495 (BV189_0511) comE 510786..512123 (-) 1338 WP_011272046.1 type IV pilus secretin PilQ Machinery gene
  BV189_RS02500 (BV189_0512) comD 512133..512546 (-) 414 WP_011272047.1 pilus assembly protein PilP Machinery gene
  BV189_RS02505 (BV189_0513) comC 512543..513064 (-) 522 WP_105893548.1 competence protein ComC Machinery gene
  BV189_RS02510 (BV189_0514) comB 513061..513567 (-) 507 WP_105893549.1 competence protein B Machinery gene
  BV189_RS02515 (BV189_0515) comA 513568..514365 (-) 798 WP_105893550.1 competence protein ComA Machinery gene
  BV189_RS02520 (BV189_0516) - 514464..517064 (+) 2601 WP_105893551.1 penicillin-binding protein 1A -
  BV189_RS02525 (BV189_0517) - 517137..517982 (+) 846 WP_011961682.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19915.03 Da        Isoelectric Point: 10.0952

>NTDB_id=777538 BV189_RS02505 WP_105893548.1 512543..513064(-) (comC) [Haemophilus influenzae strain 93P28H1]
MKAFFNDPFTPFGKWLSQPFYVHGLTFLLLLSAVIFRSVLDYIEGSSRFHEIESELAGKRSELLHQQKILTSLQQQSESR
KLSPELAAQIIPLNKQIQRLAARNGLSQHLRWEMGQKPILHLQLTGHFEKTKTFLTALLANSSQLSVSRLQFIKPEDNPL
QTEIIFQLDKETK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=777538 BV189_RS02505 WP_105893548.1 512543..513064(-) (comC) [Haemophilus influenzae strain 93P28H1]
GTGAAAGCCTTTTTTAACGATCCTTTTACACCTTTTGGAAAATGGCTAAGTCAGCCTTTTTATGTGCACGGTTTGACTTT
TTTATTGTTATTAAGTGCGGTGATTTTTCGCTCCGTTTTAGATTATATCGAGGGGAGCTCGCGTTTCCATGAAATCGAAA
GTGAATTAGCAGGGAAACGATCAGAATTGTTGCATCAACAGAAAATTTTAACCTCTTTACAGCAGCAATCGGAAAGCCGA
AAACTTTCTCCAGAACTGGCTGCGCAAATTATTCCTTTGAATAAACAAATTCAACGTTTAGCTGCGCGTAACGGTTTATC
TCAGCATTTACGTTGGGAAATGGGGCAAAAGCCTATTTTGCATTTACAGCTTACAGGTCATTTTGAGAAAACGAAGACAT
TTTTAACCGCACTTTTGGCTAATTCGTCACAGCTTTCAGTGAGTCGCTTGCAGTTTATCAAACCCGAAGACAACCCATTG
CAAACCGAGATCATTTTTCAGCTAGATAAGGAAACAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Haemophilus influenzae 86-028NP

98.266

100

0.983
  comC Haemophilus influenzae Rd KW20

96.532

100

0.965