Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PJU76_RS09745 Genome accession   NZ_CP116458
Coordinates   1947382..1948320 (+) Length   312 a.a.
NCBI ID   WP_271779368.1    Uniprot ID   -
Organism   Acidithiobacillus ferriphilus strain YL25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1942382..1953320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJU76_RS09715 (PJU76_09715) - 1942506..1942898 (-) 393 WP_064220083.1 SCP2 sterol-binding domain-containing protein -
  PJU76_RS09720 (PJU76_09720) - 1943007..1943753 (-) 747 WP_271779363.1 tRNA threonylcarbamoyladenosine dehydratase -
  PJU76_RS09725 (PJU76_09725) - 1943753..1944568 (-) 816 WP_271779364.1 TatD family hydrolase -
  PJU76_RS09730 (PJU76_09730) - 1944697..1945926 (+) 1230 WP_271779365.1 FAD-dependent monooxygenase -
  PJU76_RS09735 (PJU76_09735) - 1945916..1947103 (+) 1188 WP_271779366.1 FAD-dependent monooxygenase -
  PJU76_RS09740 (PJU76_09740) - 1947115..1947378 (+) 264 WP_271779367.1 accessory factor UbiK family protein -
  PJU76_RS09745 (PJU76_09745) comM 1947382..1948320 (+) 939 WP_271779368.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PJU76_RS09750 (PJU76_09750) - 1948631..1949776 (+) 1146 WP_271779369.1 tyrosine-type recombinase/integrase -
  PJU76_RS09755 (PJU76_09755) - 1949773..1950210 (+) 438 WP_271779370.1 helix-turn-helix transcriptional regulator -
  PJU76_RS09760 (PJU76_09760) - 1950220..1952028 (+) 1809 WP_271779371.1 hypothetical protein -
  PJU76_RS09765 (PJU76_09765) - 1952015..1952314 (+) 300 WP_271779372.1 GIY-YIG nuclease family protein -
  PJU76_RS09770 (PJU76_09770) - 1952311..1953123 (-) 813 WP_271779373.1 hypothetical protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 32706.50 Da        Isoelectric Point: 7.5961

>NTDB_id=777475 PJU76_RS09745 WP_271779368.1 1947382..1948320(+) (comM) [Acidithiobacillus ferriphilus strain YL25]
MPLAIVHSRALTGVQAAGVTVECDLGPGLPTFAVVGLAETAVKEARDRVRSAIQNSGFEFPARRMVVNLAPADLPKEGGR
FDLPMAIGILAASGQLPATALKKLEMIGELALDGSLRPVTGTLSSTLAAGQAHRAILVPQGNAQEAAFAQNTPVFACANL
AEAVAHLRGTDRLPEVISDAEAQESAIPYPDLRDVRGQESTKRALIVAAVGGHHLLLSGPPGTGKSMLAARLPGLLPPLR
RSEALEVAAIHSLQGDGFDIRHWGRRPFRSPHHSASSAALVGGGSHPRPGEISLAHHGILFLDEIRTLQYCQ

Nucleotide


Download         Length: 939 bp        

>NTDB_id=777475 PJU76_RS09745 WP_271779368.1 1947382..1948320(+) (comM) [Acidithiobacillus ferriphilus strain YL25]
TTGCCGCTGGCGATAGTCCATAGCCGTGCCCTTACCGGAGTGCAGGCGGCGGGCGTCACCGTGGAATGCGATCTGGGTCC
CGGACTGCCTACCTTTGCCGTCGTCGGCCTCGCCGAAACGGCGGTCAAGGAAGCCCGGGACCGGGTGCGCTCGGCTATTC
AGAACAGTGGCTTTGAGTTCCCGGCGCGGCGCATGGTCGTCAATCTGGCCCCCGCCGACCTGCCCAAAGAAGGTGGCCGC
TTCGATCTGCCCATGGCTATCGGTATTCTCGCCGCCAGCGGGCAACTTCCTGCGACCGCACTGAAAAAACTGGAGATGAT
TGGCGAACTCGCGCTGGACGGCAGCCTGCGTCCGGTGACGGGCACGCTCTCCAGCACACTGGCAGCGGGACAAGCCCATC
GTGCCATTCTGGTGCCGCAAGGCAATGCCCAGGAAGCCGCTTTCGCCCAAAACACCCCAGTCTTTGCCTGCGCGAATCTG
GCAGAAGCCGTCGCCCACCTGCGCGGCACGGATCGCCTGCCCGAGGTCATCTCCGATGCGGAGGCCCAGGAATCCGCCAT
TCCCTACCCCGATCTGCGTGACGTACGCGGTCAGGAATCGACCAAGCGGGCGCTGATTGTCGCAGCGGTAGGCGGCCATC
ACCTGCTCCTGTCCGGCCCGCCGGGCACCGGCAAAAGTATGCTGGCGGCGCGACTGCCCGGCCTACTGCCCCCTCTGCGC
CGCAGCGAGGCACTGGAAGTAGCCGCCATCCACAGCCTGCAAGGGGACGGCTTCGATATTCGCCATTGGGGTAGACGTCC
GTTCCGTAGCCCCCACCATAGTGCCTCTTCAGCGGCATTGGTGGGCGGGGGTTCGCACCCGCGTCCCGGCGAAATCAGCT
TGGCGCACCACGGTATTCTTTTCCTGGACGAAATACGGACCTTACAATATTGCCAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.738

97.756

0.545
  comM Glaesserella parasuis strain SC1401

54.397

98.397

0.535
  comM Vibrio campbellii strain DS40M4

54.426

97.756

0.532
  comM Haemophilus influenzae Rd KW20

52.922

98.718

0.522
  comM Legionella pneumophila str. Paris

50.476

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.476

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.831

98.718

0.433