Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MWM13_RS10240 Genome accession   NZ_AP025609
Coordinates   1892865..1894130 (+) Length   421 a.a.
NCBI ID   WP_244347671.1    Uniprot ID   -
Organism   Thermus thermophilus strain SNM3-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1887865..1899130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM13_RS10205 (TthSNM33_20200) - 1887914..1889098 (+) 1185 WP_224065365.1 ABC transporter substrate-binding protein -
  MWM13_RS10210 (TthSNM33_20210) folE 1889111..1889731 (-) 621 WP_008633832.1 GTP cyclohydrolase I FolE -
  MWM13_RS10215 (TthSNM33_20220) - 1889770..1890462 (-) 693 WP_011173892.1 gamma carbonic anhydrase family protein -
  MWM13_RS10220 (TthSNM33_20230) - 1890443..1890823 (-) 381 WP_011228981.1 NUDIX hydrolase -
  MWM13_RS10225 (TthSNM33_20240) - 1890814..1891677 (-) 864 WP_244347669.1 DUF1028 domain-containing protein -
  MWM13_RS10230 (TthSNM33_20250) - 1891736..1891894 (+) 159 Protein_1999 GTP-binding protein -
  MWM13_RS10235 (TthSNM33_20260) - 1892157..1892834 (-) 678 WP_244347670.1 hypothetical protein -
  MWM13_RS10240 (TthSNM33_20270) rarA 1892865..1894130 (+) 1266 WP_244347671.1 replication-associated recombination protein A Machinery gene
  MWM13_RS10245 (TthSNM33_20280) - 1894081..1894641 (-) 561 WP_244347672.1 hypothetical protein -
  MWM13_RS10250 (TthSNM33_20290) - 1894668..1895453 (-) 786 WP_011173899.1 carbohydrate ABC transporter permease -
  MWM13_RS10255 (TthSNM33_20300) - 1895484..1896662 (+) 1179 Protein_2004 CoA transferase -
  MWM13_RS10265 (TthSNM33_20310) - 1896786..1897664 (+) 879 WP_244347673.1 ABC transporter ATP-binding protein -
  MWM13_RS10270 (TthSNM33_20320) - 1897657..1898427 (+) 771 WP_223965773.1 ABC transporter permease -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46021.81 Da        Isoelectric Point: 8.9761

>NTDB_id=77726 MWM13_RS10240 WP_244347671.1 1892865..1894130(+) (rarA) [Thermus thermophilus strain SNM3-3]
MGEVEPLAERLRPRSLDEVLGQPHLTGPKGLLRRMLEAGRLSSMVLFGPPGTGKTTLARLLAEGVGRPFLRLSAVEAGLK
EVRQAVEEARAKGGLVLFLDEVHRFNKAQQDALLPHLESGLLTLIGATAENPAFALVPALRSRLRFFPLRPLEEADLLAL
LRRALEDPRGLPGTPYEEEALRVLAQAAGGDARFALNTLELAASFGRVDLKSVREALGAERFGMDREGDRFYDLVSALHK
SLRGSHVDAALYYLARLLQGGADPRYLARRLIRVAVEDVGLADPLALRLAVAAKEAYEALGSPEGELALVEAAVYLALAP
KSNSLYAAWKKAQEAAKAHPEAEVPLNLRNAPTGLARALGHGEGYAYYHEDKEGSFAQRYLPAGLEGLTLFEATGEGWEE
RVRERLKALRERFQTARRRRG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=77726 MWM13_RS10240 WP_244347671.1 1892865..1894130(+) (rarA) [Thermus thermophilus strain SNM3-3]
ATGGGGGAAGTGGAACCCCTGGCCGAGCGCCTCAGGCCCCGAAGCTTAGACGAGGTCCTGGGCCAGCCCCACCTCACCGG
CCCTAAAGGGCTTCTAAGGCGGATGCTGGAGGCGGGGCGGCTTTCCTCCATGGTCCTCTTCGGCCCCCCGGGCACGGGCA
AGACCACCCTGGCCCGGCTCCTCGCCGAAGGGGTGGGGAGGCCCTTCCTAAGGCTCTCCGCGGTGGAGGCGGGGCTTAAG
GAGGTGCGCCAGGCGGTGGAGGAGGCGAGGGCAAAGGGGGGCCTCGTCCTCTTCCTGGACGAGGTCCACCGCTTCAACAA
GGCCCAGCAGGACGCCCTCCTCCCCCACCTGGAGTCGGGCCTCCTCACCCTCATCGGGGCCACGGCGGAAAACCCCGCCT
TCGCCCTCGTCCCCGCCCTCCGCTCCCGCCTCCGCTTCTTCCCCTTGAGGCCCCTGGAGGAGGCCGACCTCCTCGCCCTC
CTCAGGCGGGCCCTGGAGGACCCAAGGGGCCTTCCCGGCACGCCCTACGAGGAGGAGGCCCTAAGGGTTCTCGCCCAGGC
GGCCGGGGGCGACGCCCGCTTCGCCCTGAACACCCTGGAGCTCGCCGCAAGCTTCGGCCGGGTGGACCTCAAGAGCGTGC
GGGAGGCCCTGGGGGCGGAGCGCTTCGGCATGGACCGGGAAGGGGACCGGTTTTACGACCTGGTCTCCGCCCTCCACAAG
TCCCTGCGGGGAAGCCACGTGGACGCCGCCCTCTACTACCTGGCGAGGCTCCTTCAGGGCGGGGCCGACCCCCGCTACCT
CGCCCGCAGGCTCATCCGGGTGGCGGTGGAGGACGTGGGCCTCGCCGACCCCCTGGCCCTCCGCCTCGCCGTGGCCGCCA
AGGAGGCCTACGAGGCCCTGGGAAGCCCGGAAGGGGAGCTCGCCCTGGTGGAGGCCGCAGTCTACCTGGCCCTGGCCCCC
AAGAGCAACAGCCTCTACGCCGCCTGGAAAAAGGCCCAGGAGGCGGCCAAGGCCCACCCCGAGGCCGAGGTCCCCCTGAA
CCTGAGAAACGCCCCCACCGGCCTCGCCCGCGCCCTGGGGCACGGGGAGGGGTACGCCTACTACCACGAGGACAAGGAGG
GAAGCTTCGCCCAGAGGTACCTCCCCGCGGGCCTGGAAGGCCTCACCCTCTTTGAGGCCACGGGGGAGGGGTGGGAGGAG
CGGGTGCGGGAAAGGCTCAAGGCGCTTCGGGAGCGGTTCCAAACCGCCAGGCGGCGGAGAGGCTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(44-144)

AAA C-terminal domain (AAA_assoc_2)

(176-243)

MgsA AAA+ ATPase C terminal (MgsA_C)

(244-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

38.717

100

0.387

Multiple sequence alignment