Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PPTS312_RS01620 Genome accession   NZ_AP022324
Coordinates   365178..366668 (+) Length   496 a.a.
NCBI ID   WP_019096452.1    Uniprot ID   A0A1W1YI98
Organism   Pseudomonas putida strain TS312     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 360178..371668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPTS312_RS01595 (PPTS312_03400) - 360193..361524 (-) 1332 WP_019096449.1 ammonium transporter -
  PPTS312_RS01600 (PPTS312_03410) glnK 361571..361909 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  PPTS312_RS01605 (PPTS312_03420) - 362280..362546 (+) 267 WP_026020301.1 accessory factor UbiK family protein -
  PPTS312_RS01610 (PPTS312_03430) - 362547..362900 (+) 354 WP_019096450.1 gamma-glutamylcyclotransferase family protein -
  PPTS312_RS01615 (PPTS312_03440) - 362902..364920 (-) 2019 WP_019096451.1 DUF4034 domain-containing protein -
  PPTS312_RS01620 (PPTS312_03450) comM 365178..366668 (+) 1491 WP_019096452.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PPTS312_RS01625 (PPTS312_03460) - 366665..367102 (-) 438 WP_016712654.1 DoxX family protein -
  PPTS312_RS01630 (PPTS312_03470) - 367244..367612 (-) 369 WP_174244657.1 response regulator transcription factor -
  PPTS312_RS01635 (PPTS312_03480) - 367609..368601 (-) 993 WP_019096453.1 response regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52991.79 Da        Isoelectric Point: 7.5508

>NTDB_id=77726 PPTS312_RS01620 WP_019096452.1 365178..366668(+) (comM) [Pseudomonas putida strain TS312]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPVATLAEVECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILHQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHAPLNSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
EASADVAVRVAEARELQHRRQGCANAFLNLEGLRRHCELTPADQAWLEGACERLTLSLRAAHRLLKVARTLADLEGCEAI
GRAHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=77726 PPTS312_RS01620 WP_019096452.1 365178..366668(+) (comM) [Pseudomonas putida strain TS312]
ATGTCCCTAGCCCTCGTCCATAGCCGCGCCCAGGTGGGTGTGCAGGCACCGGCAGTCAGCGTCGAAACCCACCTGGCCAA
TGGCTTGCCCCATCTCACCCTGGTCGGCTTGCCGGAAACCACCGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCG
TCAACTCCGGGCTGAACTACCCGCAGCGGCGCATTACCCAGAACCTCGCCCCTGCCGACCTGCCCAAGGATGGCGGGCGT
TACGACCTGGCCATTGCCTTGGGCATCCTGGCTGCCGACGGCCAGGTGCCGGTTGCCACCCTCGCCGAGGTCGAATGCCT
GGGCGAACTGGCGCTGTCGGGCAAACTGCGCCCGGTGCAGGGCGTGCTACCCGCTGCACTGGCAGCGCGAGAGGCAGGCC
GGGCGCTGGTGGTACCACGGGAAAATGCCGAGGAAGCCAGCCTGGCGGGTGGATTGGTGGTGTATGCAGTGGGGCACCTG
CTGGAGCTGGTCGCCCACTTGAATGGCCAGGTGCCACTGCCACCGTACGCTGCCAATGGCCTGATCCTGCATCAACGCCC
CTACCCGGACCTGAGCGAAGTGCAGGGCCAACTGGCAGCCAAACGGGCTTTGCTACTGGCAGCGGCCGGGGCACATAACC
TGTTGTTCACAGGCCCCCCAGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCCGGGCTGCTGCCACCGCTGGACGAG
CACGAGGCACTGGAGGTGGCGGCCATCCAGTCGGTCAGCGGGCATGCACCGCTGAACAGCTGGCCACAACGACCGTTCCG
CCACCCTCATCACTCCGCCTCCGGCCCGGCACTGGTCGGAGGCAGCAGCCGGCCGCAACCGGGCGAAATCACCCTGGCCC
ACCATGGTGTGCTGTTTCTGGATGAGCTGCCAGAGTTCGAACGGCGCGTGCTGGAAGTGCTGCGCGAGCCACTGGAGTCG
GGCGAAATCGTGATTGCCCGGGCCCGCGACAAGGTGCGCTTCCCGGCACGCTTTCAGCTGGTGGCCGCCATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCCACGGGCCGCTGCCGGTGCAGCACCGAGCAGATCGCACGGTACCGCAACAAGCTGT
CCGGGCCGCTGCTGGACCGTATCGACCTGCACCTGACCGTGGCCCGCGAAAGCACCACGCTGAACAACCAGCCCTGCGGC
GAGGCCAGTGCCGATGTGGCCGTCAGGGTGGCTGAAGCACGAGAACTGCAGCACCGGAGACAAGGGTGCGCAAATGCGTT
TCTCAACCTCGAGGGGTTGCGCCGCCACTGTGAGTTGACTCCAGCAGACCAGGCCTGGCTGGAGGGTGCCTGTGAGCGAT
TGACCTTATCGTTGCGGGCGGCACACCGCTTGTTGAAGGTGGCACGAACGTTGGCAGACCTGGAGGGTTGCGAGGCGATT
GGCCGGGCTCATCTAGCCGAGGCCCTGCAGTACCGGCCGGGGAGCAGTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W1YI98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.912

100

0.563
  comM Haemophilus influenzae Rd KW20

55.2

100

0.556
  comM Vibrio cholerae strain A1552

55.242

100

0.552
  comM Glaesserella parasuis strain SC1401

54.092

100

0.546
  comM Legionella pneumophila str. Paris

49.395

100

0.494
  comM Legionella pneumophila strain ERS1305867

49.395

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.316

100

0.48

Multiple sequence alignment