Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PL263_RS07975 Genome accession   NZ_CP116398
Coordinates   1788039..1788506 (-) Length   155 a.a.
NCBI ID   WP_278212498.1    Uniprot ID   -
Organism   Methylomonas sp. EFPC3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1783039..1793506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PL263_RS07960 (PL263_07960) - 1783682..1783834 (-) 153 WP_278212494.1 hypothetical protein -
  PL263_RS07965 (PL263_07965) - 1784160..1785110 (+) 951 WP_278212496.1 CFI-box-CTERM domain-containing protein -
  PL263_RS07970 (PL263_07970) - 1785128..1787935 (+) 2808 WP_278212497.1 CHAT domain-containing protein -
  PL263_RS07975 (PL263_07975) ssb 1788039..1788506 (-) 468 WP_278212498.1 single-stranded DNA-binding protein Machinery gene
  PL263_RS07980 (PL263_07980) - 1788537..1789922 (-) 1386 WP_278212499.1 MFS transporter -
  PL263_RS07985 (PL263_07985) - 1790175..1790615 (+) 441 WP_278212501.1 putative lipoprotein -
  PL263_RS07990 (PL263_07990) - 1790628..1792508 (+) 1881 WP_278212502.1 hypothetical protein -
  PL263_RS07995 (PL263_07995) avd 1792928..1793278 (-) 351 WP_278212504.1 diversity-generating retroelement protein Avd -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17204.06 Da        Isoelectric Point: 5.7890

>NTDB_id=777127 PL263_RS07975 WP_278212498.1 1788039..1788506(-) (ssb) [Methylomonas sp. EFPC3]
MLNKVMLIGRLGADPEVRYMPSGDAITTIRLATSRRWKDRNTNERKEETEWHRVVFFSGLAKIAGEYLKKGSQVYVDGRI
RTQKWQGQDGQDRYTTEIVAENMHMLDSRSGGTASYADSNTPPPSAYDNRPAGAGGSPAPSGPAAYDDFDDDIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=777127 PL263_RS07975 WP_278212498.1 1788039..1788506(-) (ssb) [Methylomonas sp. EFPC3]
ATGCTGAACAAAGTCATGCTGATCGGCCGCCTCGGCGCCGATCCGGAAGTACGTTACATGCCGAGCGGCGACGCCATCAC
CACGATCCGCCTGGCGACCAGCCGGCGTTGGAAAGACCGCAATACCAACGAGCGCAAGGAAGAAACCGAATGGCACCGGG
TGGTGTTTTTCAGCGGCTTGGCCAAAATCGCCGGCGAGTACCTTAAGAAGGGCAGCCAGGTCTATGTCGATGGCCGCATC
CGCACTCAGAAATGGCAGGGCCAGGACGGCCAGGACCGCTACACCACCGAAATCGTCGCCGAAAATATGCATATGTTGGA
CAGCCGCAGCGGCGGTACCGCCAGCTACGCCGACAGCAATACGCCGCCGCCGAGTGCCTACGACAACCGCCCGGCAGGCG
CTGGCGGCAGCCCGGCGCCCTCCGGCCCGGCCGCGTACGACGATTTCGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.893

100

0.535
  ssb Vibrio cholerae strain A1552

48.256

100

0.535
  ssb Neisseria meningitidis MC58

47.126

100

0.529
  ssb Neisseria gonorrhoeae MS11

46.552

100

0.523
  ssb Latilactobacillus sakei subsp. sakei 23K

32.184

100

0.361