Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   PFZ59_RS07505 Genome accession   NZ_CP116393
Coordinates   1477698..1478639 (+) Length   313 a.a.
NCBI ID   WP_277696746.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1472698..1483639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS07495 (PFZ59_07495) - 1474653..1475402 (+) 750 WP_277696744.1 hypothetical protein -
  PFZ59_RS07500 (PFZ59_07500) metG 1475632..1477635 (+) 2004 WP_277696745.1 methionine--tRNA ligase -
  PFZ59_RS07505 (PFZ59_07505) coiA 1477698..1478639 (+) 942 WP_277696746.1 competence protein CoiA family protein Machinery gene
  PFZ59_RS07510 (PFZ59_07510) pepF 1478868..1480670 (+) 1803 WP_277696747.1 oligoendopeptidase F Regulator
  PFZ59_RS07515 (PFZ59_07515) - 1480672..1481115 (+) 444 WP_105151236.1 hypothetical protein -
  PFZ59_RS07520 (PFZ59_07520) - 1481126..1481674 (+) 549 WP_277696749.1 DUF6630 family protein -
  PFZ59_RS07525 (PFZ59_07525) - 1481749..1482468 (+) 720 WP_277696750.1 O-methyltransferase -
  PFZ59_RS07530 (PFZ59_07530) prsA 1482530..1483531 (+) 1002 WP_277696751.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36203.67 Da        Isoelectric Point: 7.6273

>NTDB_id=777106 PFZ59_RS07505 WP_277696746.1 1477698..1478639(+) (coiA) [Streptococcus suis strain SS/UPM/MY/F001]
MLVALDEDGQVFNVLENPAPQGRYSCPGCGGLVRYKSGKVLRSHFAHVTLRDCTYFSENESAQHLSLKCCLYSWLINAEQ
VELEKCLPSIGQVADLFVNNSLALEVQCSSLPISRLQLRTQAYHEAGFQVLWLLGNGLWIKERLSKLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLDILRLPFAKQALSHLTCPLDRDLPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLSPVYQDFDQYYGNTEDKQKQVLYPPVIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=777106 PFZ59_RS07505 WP_277696746.1 1477698..1478639(+) (coiA) [Streptococcus suis strain SS/UPM/MY/F001]
ATGTTAGTTGCACTTGATGAAGATGGGCAAGTCTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGTCGCTATTCTTGTCC
AGGTTGTGGAGGACTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCATGTCACCCTACGGGATTGCA
CATACTTTTCCGAGAATGAATCTGCCCAGCACCTGTCACTTAAGTGTTGTCTGTACAGTTGGTTAATCAATGCCGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTTAATAATAGTCTAGCTTTGGAAGTCCA
ATGTTCCAGTCTGCCCATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCATGAAGCTGGTTTTCAGGTTCTCTGGCTGT
TGGGAAATGGTCTATGGATAAAAGAAAGATTAAGTAAATTACACAAGCAATTTCTCTCTTTTAGTATGAACATGGGTTTT
CACCTCTGGGAATTGGATGACGAGAAAAAAGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGCCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGACATCTTGCGTCTGCCTTTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTA
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTATCCCCACATCCGTCT
GCCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAAGTCCAGTCTATCAGGATTTTGACCAGTATTACGGCA
ATACTGAAGACAAACAGAAACAGGTTCTATATCCACCTGTAATTTATAGGAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.564

99.681

0.524
  coiA Streptococcus pneumoniae TIGR4

50.641

99.681

0.505
  coiA Streptococcus pneumoniae Rx1

50.641

99.681

0.505
  coiA Streptococcus pneumoniae D39

50.641

99.681

0.505
  coiA Streptococcus pneumoniae R6

50.641

99.681

0.505
  coiA Lactococcus lactis subsp. cremoris KW2

41.25

100

0.422