Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   PFZ59_RS07510 Genome accession   NZ_CP116393
Coordinates   1478868..1480670 (+) Length   600 a.a.
NCBI ID   WP_277696747.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1473868..1485670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS07495 (PFZ59_07495) - 1474653..1475402 (+) 750 WP_277696744.1 hypothetical protein -
  PFZ59_RS07500 (PFZ59_07500) metG 1475632..1477635 (+) 2004 WP_277696745.1 methionine--tRNA ligase -
  PFZ59_RS07505 (PFZ59_07505) coiA 1477698..1478639 (+) 942 WP_277696746.1 competence protein CoiA family protein Machinery gene
  PFZ59_RS07510 (PFZ59_07510) pepF 1478868..1480670 (+) 1803 WP_277696747.1 oligoendopeptidase F Regulator
  PFZ59_RS07515 (PFZ59_07515) - 1480672..1481115 (+) 444 WP_105151236.1 hypothetical protein -
  PFZ59_RS07520 (PFZ59_07520) - 1481126..1481674 (+) 549 WP_277696749.1 DUF6630 family protein -
  PFZ59_RS07525 (PFZ59_07525) - 1481749..1482468 (+) 720 WP_277696750.1 O-methyltransferase -
  PFZ59_RS07530 (PFZ59_07530) prsA 1482530..1483531 (+) 1002 WP_277696751.1 peptidylprolyl isomerase PrsA -
  PFZ59_RS07535 (PFZ59_07535) - 1483739..1484224 (+) 486 Protein_1436 LURP-one-related family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69146.33 Da        Isoelectric Point: 4.5756

>NTDB_id=777107 PFZ59_RS07510 WP_277696747.1 1478868..1480670(+) (pepF) [Streptococcus suis strain SS/UPM/MY/F001]
MSKQRYEIEEKYQWDLTTIFPTDDAWEAELADLQAETEKTKEFAGHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYAAFSQAFAFYEPEFMAITEEQLEAFKAEEPTLVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEEYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEGYLNDAFKVFEARLTELEELVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=777107 PFZ59_RS07510 WP_277696747.1 1478868..1480670(+) (pepF) [Streptococcus suis strain SS/UPM/MY/F001]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTGACCACTATTTTCCCAACCGATGATGCCTGGGA
GGCAGAACTTGCAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTGCTGGACTCAGCTAAAAGTC
TCTTAGAAATTAGCGAAACGCAGCTCGGTCTCATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGTGAAGGCAAATATCAGGAATTTCAAGCTAAGGCCATGGGCTTGTATGCTGCCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAGCTGGAGGCCTTTAAGGCAGAAGAGCCTACTCTTGTTCAGT
ACAGCCACCAATTTGAAAAACTTTTAGCGGCTAAGGACCATGTCCTGTCACAAGAGGTGGAAGAAGTCCTTGCGGCGACC
AGCGAGATTTTCGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCTAGCCTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTGCCACTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGATGTCCGCCAAGAAG
CATACGAAGCTATGTACGGTACCTACGAGCAGTTCCAGCATACCTACGCTAAGACTTTGCAGTCTAATGTCAAGGTCAAT
AACCTGAAAGCTCGTTTGCGGAAGTACGATTCAGCCCGTCACGCATCACTTGCAGCTAATTTCATTCCAGAATCCGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCACCGTTACATCAATTTGCGTAAGAAACTCCTGGGTA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTCAGTACCAAGATTTCTTATGAAGATGCTCTCAAA
AAATGCCAAGAAACCTTGGAAATTTTCGGTGAGGAGTATTCGGCTATTGTGAAGGAAGCCTTCGAAAACCGCTGGATTGA
TGTCCATGTCAATGAAGGAAAACGCTCAGGAGCATACTCAGGAGGTGCTTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAACTTGGATAACATGTACACTCTTATCCATGAAACAGGCCACTCACTTCATTCTATGTTGACTCGTAAGACT
CAACCTTATGTCTATGGACATTATTCCCTATTCTTGGCTGAAATTGCTTCAACGACCAATGAAAATCTTTTGACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGATAAGGAACGCTTTGCTATTCTCAATCACTATCTAGATGGTTTCCGTGGAACAGTCT
TCCGCCAGACCCAATTTGCCGAGTTTGAGCAAGCGATCTACAAGGCAGACCAGGAAGGTCAAGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACAAACGAGAAATACTATGGACTTTCTGCAGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAGTATGCGACAGGTTTCGCAGCAGCATCAGCTCTTGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGATAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATTGCCAAAGCAGGTGTAGACATGACCAAGGAAGGCTATCTTAATGATGCTTTCAAAGTTTTTGAAGCACGCCT
AACTGAGTTAGAGGAGCTTGTTGAAAAAGGGGTACATCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-580)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.5

100

0.695