Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PK654_RS15740 Genome accession   NZ_CP116383
Coordinates   3344862..3346388 (-) Length   508 a.a.
NCBI ID   WP_271696871.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43137     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3339862..3351388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PK654_RS15715 (PK654_15715) - 3340205..3340471 (+) 267 WP_271696866.1 YihD family protein -
  PK654_RS15720 (PK654_15720) ccoG 3340728..3342146 (+) 1419 WP_271696867.1 cytochrome c oxidase accessory protein CcoG -
  PK654_RS15725 (PK654_15725) - 3342211..3343197 (+) 987 WP_271696868.1 serine/threonine protein kinase -
  PK654_RS15730 (PK654_15730) - 3343256..3343855 (+) 600 WP_271696869.1 thiol:disulfide interchange protein DsbA/DsbL -
  PK654_RS15735 (PK654_15735) - 3343895..3344776 (-) 882 WP_271696870.1 acyltransferase -
  PK654_RS15740 (PK654_15740) comM 3344862..3346388 (-) 1527 WP_271696871.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PK654_RS15745 (PK654_15745) ilvG 3346809..3348455 (+) 1647 WP_271696872.1 acetolactate synthase 2 catalytic subunit -
  PK654_RS15750 (PK654_15750) ilvM 3348455..3348724 (+) 270 WP_271696873.1 acetolactate synthase 2 small subunit -
  PK654_RS15755 (PK654_15755) ilvE 3348739..3349680 (+) 942 WP_271696874.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55159.34 Da        Isoelectric Point: 9.5001

>NTDB_id=776872 PK654_RS15740 WP_271696871.1 3344862..3346388(-) (comM) [Vibrio sp. SCSIO 43137]
MALAIVHSRASVGVESPLVMVEVHISKGMPGFTLVGLPETTVKESKDRVRSAIINSNFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASNQLAASALQNREFIGELALSGELRYIKGVLPAAVAAIKAGHSLTVPNQNGDQAALVGEQQHKSAASL
LEVCADLHGQKKLTLFQSSSANIKPRNSKRDMQDIIGQQHGKRALEIAAAGGHNLLFIGPPGTGKTMLASRLSDLLPEMS
TREALETASVTSLTEQDINQFNWRNRPFRAPHHSSSMAALVGGGSIPRPGEISLSHNGLLFLDEMPEFDRKVLDSLREPL
ESGEIIISRAARKTCFPARFQLIGALNPSPSGHYEGDLSRTNPQAILRYLSKLSGPLLDRFDMSLEVPLLPQGTLASGGD
RGEPTEVIRERVLSARDKMEQRSGCINSRLGSRAIDKHCPLRKDDAVFLETALHKLGLSIRAYHRIIKVARTIADLEGAE
QVERKHLSEALGYRAMDRLLKYLNAQVV

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=776872 PK654_RS15740 WP_271696871.1 3344862..3346388(-) (comM) [Vibrio sp. SCSIO 43137]
ATGGCATTAGCAATTGTACACAGCAGGGCCAGTGTCGGAGTTGAGTCTCCGCTGGTTATGGTAGAGGTTCATATCAGCAA
AGGCATGCCGGGGTTTACTCTGGTCGGATTGCCGGAAACAACGGTAAAGGAGTCTAAAGACAGAGTCAGGAGTGCGATTA
TTAACTCCAATTTTGAGTTTCCGGCCAAAAGGATCACGGTAAACCTTGCGCCGGCTGATCTGCCCAAAGAGGGGGGGCGG
TTTGACCTGCCAATTGCCCTTGGCATTCTGGCGGCATCAAATCAGCTGGCAGCGAGTGCACTACAAAACAGGGAGTTTAT
CGGTGAGCTGGCTCTGTCCGGTGAACTTCGTTATATCAAGGGGGTATTACCAGCAGCAGTAGCTGCCATTAAAGCGGGAC
ATAGTTTAACGGTACCAAATCAAAACGGTGATCAGGCAGCGCTGGTGGGAGAACAACAACATAAGTCGGCAGCCAGCCTG
CTGGAGGTGTGTGCTGATCTGCACGGTCAGAAAAAACTGACCCTGTTTCAGTCATCTTCTGCAAATATCAAACCCCGAAA
TAGTAAAAGAGATATGCAGGATATTATTGGTCAGCAGCATGGGAAGCGGGCTCTGGAAATTGCTGCCGCTGGTGGCCATA
ATTTATTGTTTATCGGCCCGCCCGGTACCGGAAAAACCATGCTGGCGTCACGTCTGTCCGATTTATTGCCGGAAATGAGC
ACCAGAGAGGCGCTGGAAACCGCTTCTGTGACATCACTGACGGAACAGGATATCAATCAGTTTAACTGGAGAAACAGACC
CTTCAGAGCGCCTCACCACTCTTCTTCTATGGCGGCACTGGTTGGTGGTGGCTCTATACCAAGGCCGGGAGAGATTTCTC
TGTCCCATAACGGGCTGCTTTTTCTCGATGAGATGCCGGAATTTGACCGAAAAGTGCTCGACTCTCTTCGTGAGCCCCTG
GAGTCGGGTGAAATCATTATCTCACGTGCTGCGCGTAAAACCTGCTTTCCGGCGCGTTTTCAGCTGATAGGGGCACTAAA
CCCCAGCCCTAGCGGACATTATGAAGGTGATCTGTCGCGAACCAATCCTCAGGCCATTCTGCGTTATCTATCTAAACTTT
CCGGCCCCTTGCTGGACAGGTTTGATATGTCACTGGAAGTTCCTCTGCTGCCGCAGGGAACCCTTGCATCTGGCGGAGAC
AGAGGCGAGCCGACTGAGGTTATCAGGGAGAGGGTTTTATCCGCCAGAGACAAGATGGAGCAACGTTCCGGCTGTATTAA
TTCCCGTCTGGGCAGCCGTGCTATAGATAAGCACTGTCCTTTGAGGAAAGACGATGCAGTGTTTTTAGAGACGGCACTGC
ATAAACTGGGGTTATCTATAAGGGCTTACCACAGGATAATTAAGGTCGCCAGAACCATTGCTGATCTGGAAGGTGCGGAG
CAGGTAGAGAGAAAACATTTGTCGGAAGCGCTGGGTTACCGGGCGATGGATAGATTGTTAAAGTACCTTAACGCTCAAGT
GGTTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

77.362

100

0.774
  comM Vibrio cholerae strain A1552

76.378

100

0.764
  comM Haemophilus influenzae Rd KW20

64.37

100

0.644
  comM Glaesserella parasuis strain SC1401

63.333

100

0.636
  comM Legionella pneumophila str. Paris

50.101

97.835

0.49
  comM Legionella pneumophila strain ERS1305867

50.101

97.835

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.008

100

0.441