Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PFX98_RS09175 Genome accession   NZ_CP116346
Coordinates   2016189..2017706 (-) Length   505 a.a.
NCBI ID   WP_285234895.1    Uniprot ID   A0AA95SQR8
Organism   Paucibacter sediminis strain S2-9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2011189..2022706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFX98_RS09155 (PFX98_09155) metH 2011710..2014445 (+) 2736 WP_285234891.1 methionine synthase -
  PFX98_RS09160 (PFX98_09160) - 2014556..2015056 (+) 501 WP_285234892.1 glycine zipper 2TM domain-containing protein -
  PFX98_RS09165 (PFX98_09165) - 2015056..2015562 (+) 507 WP_285234893.1 phosphoglycerate mutase family protein -
  PFX98_RS09170 (PFX98_09170) - 2015651..2016184 (+) 534 WP_285234894.1 PEP-CTERM sorting domain-containing protein -
  PFX98_RS09175 (PFX98_09175) comM 2016189..2017706 (-) 1518 WP_285234895.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PFX98_RS09180 (PFX98_09180) - 2017966..2018679 (+) 714 WP_285234896.1 TorF family putative porin -
  PFX98_RS09185 (PFX98_09185) glnK 2018702..2019040 (+) 339 WP_285234897.1 P-II family nitrogen regulator -
  PFX98_RS09190 (PFX98_09190) amt 2019099..2020634 (+) 1536 WP_285234898.1 ammonium transporter -
  PFX98_RS09195 (PFX98_09195) - 2020710..2021090 (-) 381 WP_285234899.1 response regulator -
  PFX98_RS09200 (PFX98_09200) gshA 2021218..2022513 (+) 1296 WP_285234900.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 52950.96 Da        Isoelectric Point: 7.7984

>NTDB_id=776790 PFX98_RS09175 WP_285234895.1 2016189..2017706(-) (comM) [Paucibacter sediminis strain S2-9]
MSLAIIHSRALDGVSAAPVTVEVHLANGLPSFTLVGLAETEVKEARERVRAALLNSGLSFPHSQRITVNLAPADLPKEGG
RFDLPIALGLLAASGQIDDKLLADLECAGELSLAGELRPVRGAMAMALALRREGQGRRLLLPVTSAQEAALVRGAAVHGA
GHLLEVVAALGPGGGGQLPLPMPAAQPRAAMPGPDLNEIKGQAGPKRALEIAAAGGLSLLLIGPPGTGKSMLAQRLPGLL
PAMQEHEALESAAMLSLAGMFTPERWGQRSFRSPHHSASSAALVGGGSPPRPGEVSLALHGVLFLDELPEFSRSALEALR
EPMETGHIQISRAARQSEFPADFQLIAAMNPCPCGHAGSLVQSCRCTPEQISRYQGRLSGPFLDRLDLLVEVPVLPAQVL
ADASGGEASSLVAARVARARELALARQGCSNARLSVKQLDEVARIDQATTAFMHKAANRLAWSARSYHRVLRVARTVADL
EGSADIAIGHLSEAIQWRRGLGREA

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=776790 PFX98_RS09175 WP_285234895.1 2016189..2017706(-) (comM) [Paucibacter sediminis strain S2-9]
ATGTCTCTGGCCATCATCCACAGCCGTGCCCTGGACGGCGTGAGTGCCGCACCGGTCACGGTGGAGGTGCATCTGGCCAA
CGGCCTGCCCAGCTTCACCCTGGTGGGGCTGGCGGAAACCGAGGTCAAAGAGGCTCGCGAGCGCGTGCGCGCCGCCCTGC
TCAACAGCGGTTTGAGCTTTCCACACAGCCAGCGCATCACCGTGAACCTGGCGCCGGCCGACCTGCCCAAGGAGGGCGGG
CGCTTCGATCTGCCGATCGCGCTGGGCCTGCTGGCGGCCAGCGGCCAGATCGACGACAAGCTGCTGGCCGACCTCGAATG
CGCGGGCGAACTCTCGCTGGCCGGCGAGCTGCGCCCGGTGCGCGGCGCCATGGCGATGGCCCTGGCGCTGCGGCGCGAGG
GCCAGGGTCGCCGGCTCCTGCTGCCGGTCACGAGTGCCCAGGAGGCGGCCTTGGTGCGCGGCGCGGCGGTCCACGGCGCC
GGCCATCTGCTCGAGGTGGTGGCGGCCCTCGGCCCGGGCGGCGGCGGGCAGCTGCCCTTGCCGATGCCGGCCGCGCAGCC
CAGGGCAGCGATGCCCGGGCCCGACCTCAACGAAATCAAGGGCCAGGCCGGCCCCAAGCGGGCCTTGGAGATTGCCGCGG
CCGGAGGCCTGAGCCTGCTGCTGATCGGGCCGCCAGGCACCGGCAAGTCCATGCTGGCGCAGCGCCTGCCGGGCCTGCTG
CCGGCGATGCAGGAGCACGAGGCCTTGGAATCGGCGGCGATGCTGAGCCTGGCCGGCATGTTCACGCCCGAGCGCTGGGG
ACAGCGCAGCTTTCGCAGCCCCCACCACAGCGCGTCCAGCGCCGCCCTGGTGGGCGGTGGCTCGCCGCCGCGCCCCGGCG
AGGTATCGCTGGCCTTGCACGGCGTGCTGTTCCTCGACGAGTTGCCCGAATTCAGTCGCAGCGCCCTGGAGGCCTTGCGC
GAACCAATGGAGACCGGCCACATCCAGATCTCGCGCGCCGCGCGGCAATCGGAGTTCCCTGCCGACTTCCAGCTGATCGC
GGCCATGAACCCCTGCCCCTGCGGCCATGCCGGCAGCCTGGTGCAAAGCTGCCGCTGCACGCCCGAGCAGATCTCACGCT
ACCAGGGGCGGCTCAGCGGCCCCTTTCTCGACCGCCTGGATCTGCTGGTGGAGGTGCCGGTGCTGCCGGCCCAGGTGCTG
GCGGACGCCAGCGGGGGCGAAGCCAGCAGCCTGGTGGCCGCCCGGGTGGCGCGGGCGCGCGAACTGGCGCTGGCGCGCCA
GGGTTGCAGCAATGCCAGGCTGAGCGTCAAGCAACTCGATGAGGTGGCGCGCATCGACCAGGCCACCACCGCATTCATGC
ACAAGGCGGCGAATCGCCTCGCTTGGTCGGCGCGCAGCTACCACCGCGTGCTGAGAGTGGCGCGCACCGTCGCGGATCTG
GAGGGCAGCGCCGACATCGCCATCGGCCACCTGAGTGAGGCGATCCAGTGGCGGCGCGGCCTCGGCCGCGAGGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(195-397)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.485

99.604

0.523
  comM Haemophilus influenzae Rd KW20

51.587

99.802

0.515
  comM Vibrio campbellii strain DS40M4

51.6

99.01

0.511
  comM Glaesserella parasuis strain SC1401

51.19

99.802

0.511
  comM Legionella pneumophila str. Paris

48.733

100

0.495
  comM Legionella pneumophila strain ERS1305867

48.733

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.732

100

0.42