Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   PH604_RS09695 Genome accession   NZ_CP116342
Coordinates   1848664..1849851 (-) Length   395 a.a.
NCBI ID   WP_020997408.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SE690.     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1843664..1854851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH604_RS09670 (PH604_09645) - 1843796..1843990 (-) 195 WP_164715818.1 hypothetical protein -
  PH604_RS09675 (PH604_09650) - 1844004..1844774 (-) 771 Protein_1866 opacity family porin -
  PH604_RS09680 (PH604_09655) - 1844910..1845706 (-) 797 Protein_1867 IS1595 family transposase -
  PH604_RS09685 (PH604_09660) topA 1845793..1848099 (-) 2307 WP_050157276.1 type I DNA topoisomerase -
  PH604_RS09690 (PH604_09665) - 1848177..1848638 (-) 462 WP_003690120.1 DUF494 domain-containing protein -
  PH604_RS09695 (PH604_09670) dprA 1848664..1849851 (-) 1188 WP_020997408.1 DNA-processing protein DprA Machinery gene
  PH604_RS09700 (PH604_09675) - 1849942..1851219 (-) 1278 WP_003690124.1 sigma-54-dependent transcriptional regulator -
  PH604_RS09705 (PH604_09680) - 1851212..1853332 (-) 2121 WP_202838290.1 sensor histidine kinase -
  PH604_RS09710 (PH604_09685) - 1853332..1853931 (-) 600 WP_003690128.1 DUF4390 domain-containing protein -

Sequence


Protein


Download         Length: 395 a.a.        Molecular weight: 41911.00 Da        Isoelectric Point: 6.3096

>NTDB_id=776774 PH604_RS09695 WP_020997408.1 1848664..1849851(-) (dprA) [Neisseria gonorrhoeae strain SE690.]
MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSAPAEQVAPAVRHKHALEAWRNAEKRALARQAAEAALEWEMRD
GCRLMLLQDEDFPEMLTQGLTAPPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGRALGGKGIPTVSGMASGIDT
AAHQGALEAEGGTIAVWGTGIDRIYPPANKNLAYEIAEKGLIVSEFPIGTRPYAGNFPRRNRLIAALSQVTLVVEAALES
GSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLTECLDDILNECPGLLQNTGASSYSINKDTPDTGRRTVQT
AYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQRIRT

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=776774 PH604_RS09695 WP_020997408.1 1848664..1849851(-) (dprA) [Neisseria gonorrhoeae strain SE690.]
ATGACAGAGGACGAACGTTTCGCGTGGCTGCAATTGGCGTTTACGCCCTATATCGGCGCGGAAAGTTTCCTGCTGCTGAT
GCGCAGTTTCGGCAGCGCGCAAAATGCCTTGTCCGCACCGGCGGAACAGGTTGCCCCGGCGGTGCGGCATAAGCACGCGC
TTGAGGCTTGGCGCAATGCGGAAAAACGCGCTTTGGCGCGGCAGGCGGCAGAAGCGGCGTTGGAATGGGAAATGCGGGAC
GGATGCCGCCTGATGCTGCTTCAGGATGAAGATTTCCCCGAAATGCTGACGCAGGGGCTGACCGCGCCGCCGGTTTTGTT
TTTGCGCGGCAACGTGCGGCTGCTGCACAAGCCTTCCGCCGCCATCGTCGGCAGCCGCCATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTCGGCAGGGCGTTGGGTGGGAAAGGCATTCCTACCGTGTCGGGTATGGCTTCGGGCATCGACACC
GCCGCCCATCAGGGCGCACTGGAGGCAGAAGGCGGCACCATCGCCGTGTGGGGGACGGGCATAGACCGCATTTATCCGCC
GGCCAACAAAAACCTTGCTTATGAAATCGCCGAAAAAGGGCTGATTGTCAGCGAGTTCCCCATCGGCACGCGGCCGTATG
CCGGCAACTTTCCGCGCCGCAACCGCCTGATTGCCGCGCTGTCGCAGGTTACGCTGGTGGTCGAGGCCGCCTTGGAATCC
GGTTCGCTGATTACCGCCGGCCTGGCGGCAGAAATGGGGCGCGAAGTCATGGCGGTGCCCGGTTCGATAGACAACCCCCA
CAGCAAAGGCTGCCACAAACTGATTAAAGACGGAGCGAAACTGACGGAATGTTTGGACGACATCCTGAACGAATGCCCGG
GGCTATTGCAAAATACGGGTGCTTCATCATATTCTATAAATAAGGATACGCCCGACACGGGCCGCCGCACCGTTCAGACG
GCATACGCCCCGCCGCCTGCCGCAAAAATGCCGTCTGAAGGGGCGGCAGGCGGCACAGCCGTCGGCGGCATACTGGATAA
AATGGGTTTCGACCCCATCCATCCCGACGTGCTTGCCGGACAGTTGGCTATGCCTGCCGCAGATTTGTATGCCGCACTGT
TGGAATTGGAATTGGACGGCAGCGTTGCCGCAATGCCCGGCGGCAGATACCAGCGTATCCGAACTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

100

100

1

  dprA Neisseria gonorrhoeae strain FA1090

99.241

100

0.992

  dprA Neisseria meningitidis strain C311

89.924

100

0.904

  dprA Neisseria meningitidis MC58

89.924

100

0.904

  dprA Vibrio cholerae strain A1552

36.709

100

0.367