Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H7R46_RS17510 Genome accession   NZ_AP022302
Coordinates   3681582..3683069 (+) Length   495 a.a.
NCBI ID   WP_032037737.1    Uniprot ID   -
Organism   Acinetobacter sp. BEC1-S18-ESBL-01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3676582..3688069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R46_RS17485 (BE1S18E01_33920) ribD 3677537..3678622 (-) 1086 WP_032012529.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  H7R46_RS17490 (BE1S18E01_33930) nrdR 3678638..3679096 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  H7R46_RS17495 (BE1S18E01_33940) - 3679220..3680614 (-) 1395 WP_032012527.1 ammonium transporter -
  H7R46_RS17500 (BE1S18E01_33950) glnK 3680672..3681010 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  H7R46_RS17505 (BE1S18E01_33960) - 3681289..3681516 (+) 228 WP_002121136.1 accessory factor UbiK family protein -
  H7R46_RS17510 (BE1S18E01_33970) comM 3681582..3683069 (+) 1488 WP_032037737.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H7R46_RS17515 (BE1S18E01_33980) - 3683173..3683718 (+) 546 WP_032012525.1 NADPH-dependent FMN reductase -
  H7R46_RS17520 (BE1S18E01_33990) - 3683743..3685176 (-) 1434 WP_086260983.1 PLP-dependent aminotransferase family protein -
  H7R46_RS17525 (BE1S18E01_34000) - 3685288..3686064 (+) 777 WP_086260984.1 aldolase -
  H7R46_RS17530 (BE1S18E01_34010) - 3686080..3686958 (+) 879 WP_002121240.1 dihydrodipicolinate synthase family protein -
  H7R46_RS17535 (BE1S18E01_34020) - 3687000..3687812 (-) 813 WP_002121202.1 TorF family putative porin -
  H7R46_RS17540 (BE1S18E01_34030) - 3687851..3688039 (-) 189 WP_002121272.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54454.46 Da        Isoelectric Point: 7.3646

>NTDB_id=77663 H7R46_RS17510 WP_032037737.1 3681582..3683069(+) (comM) [Acinetobacter sp. BEC1-S18-ESBL-01]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAIGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL
KEVCDHFLGIKSLSSTEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTAVRQRVIYAYEQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=77663 H7R46_RS17510 WP_032037737.1 3681582..3683069(+) (comM) [Acinetobacter sp. BEC1-S18-ESBL-01]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTCTGATTGAAGTTGAGGTACATGTGAGTCA
AGGCTTACCTTCTCTTACTATTGTCGGCCTAGCAGAGGCGGCGGTAAGAGAAAGTAAAGACCGAGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAATTTCCAACAAAACGGCTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGATCACGT
CTAGATTTACCTATTGCTATAGGTATTTTAATTGCTTCTGGCCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCTTTAGATGGCCATGTAAGACCAGTGTCAGGTACTTTAACTTTGGCAATGGCGTGTCAACAGGCCAAGC
ATAAAATGCTTTTACCTCTCGATAACAGTCAGGATATTAGCCATTTACCAAATCTTGAATGTTATCCAGTGAGCCATTTA
AAAGAAGTTTGTGATCATTTCTTGGGCATCAAATCGCTATCTTCGACTGAACCTGCAACGACCTCAAACCAAATGCCTTA
TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGGCACTCGC
TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCTTCACGCCTTCCTTCAATTTTGCCACCGCTTTCTAAT
CAGGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCCCATACCTTTGGTCAGCGTCCATTTCGTGCGCC
CCACCATACAGCATCAGCGATTGCACTAGTTGGGGGCGGTTCACATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG
GCGTTTTGTTTTTAGATGAACTCCCTGAGTTTGACAGAAAAGTTCTAGAGGTCTTACGTCAGCCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCTGCAAACTTTCAGCTCATTGCAGCGATGAACCCTTGTCCATG
TGGTTATGCGTTTAATCAAGACAGCCGTTGCCAATGTTCACCAGAGAGTATTAAGCGATATCAAAACCGTATATCGGGGC
CATTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAGGAACTGCAAGATCCAACGCCTGCTGAA
GACTCTACGGCTGTAAGACAGCGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT
TTCACCCAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCACAACAACGTTTGA
ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGAGTAGCTCGTACCATTGCCGATTTGGCTCAAAGTGAGATGATCCAA
AGTCCTCATCTTACAGAAGCGCTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.806

100

0.509
  comM Glaesserella parasuis strain SC1401

50.1

100

0.505
  comM Legionella pneumophila str. Paris

49.398

100

0.497
  comM Legionella pneumophila strain ERS1305867

49.398

100

0.497
  comM Haemophilus influenzae Rd KW20

48.898

100

0.493
  comM Vibrio campbellii strain DS40M4

47.677

100

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.813

100

0.475

Multiple sequence alignment