Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PJW05_RS25830 Genome accession   NZ_CP116304
Coordinates   5615953..5617449 (+) Length   498 a.a.
NCBI ID   WP_271409768.1    Uniprot ID   -
Organism   Pseudomonas sp. Q1-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5610953..5622449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJW05_RS25800 - 5611662..5612366 (+) 705 WP_271409763.1 HAD-IA family hydrolase -
  PJW05_RS25805 sutA 5612593..5612907 (-) 315 WP_271409764.1 transcriptional regulator SutA -
  PJW05_RS25810 - 5612984..5613409 (-) 426 WP_271409765.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PJW05_RS25815 - 5613548..5614867 (-) 1320 WP_271409766.1 ammonium transporter -
  PJW05_RS25820 glnK 5614902..5615240 (-) 339 WP_003457590.1 P-II family nitrogen regulator -
  PJW05_RS25825 - 5615651..5615914 (+) 264 WP_271409767.1 accessory factor UbiK family protein -
  PJW05_RS25830 comM 5615953..5617449 (+) 1497 WP_271409768.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PJW05_RS25835 - 5617859..5618671 (+) 813 WP_271409769.1 TlpA disulfide reductase family protein -
  PJW05_RS25840 - 5618960..5619274 (-) 315 WP_271409770.1 hypothetical protein -
  PJW05_RS25845 - 5619394..5619969 (+) 576 WP_271409771.1 fimbrial protein -
  PJW05_RS25850 - 5620028..5620747 (+) 720 WP_271409772.1 molecular chaperone -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 52901.82 Da        Isoelectric Point: 7.7278

>NTDB_id=776522 PJW05_RS25830 WP_271409768.1 5615953..5617449(+) (comM) [Pseudomonas sp. Q1-7]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPSLTLVGLPETAVKESKDRVRSAIQNSGFDFPPRRITLNLAPADLPKDGGR
FDLAIALGVLAASGQLPASALEEIECLGELALSGALRPVQGVLPAALAARAAGRTLVVPRENAEEASLASGLKVLAAGHL
LELTAHFAGHTPLAPYAATGLLQERPPYPDLADVQGQAAAKRALLVAAAGSHNLLFCGPPGTGKTLLASRLPGLLPPLEE
QEALEVAAIHSVASHAPLQAWPQRPFRQPHHSASGAALVGGGSRPKPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GEIVIARAHDKVRFPARFQLVAAMNPCPCGYLGDPGGRCRCTPEQIQRYRTRLSGPLLDRIDLHLTVAREATALEPPAST
GPGSAEAAAEVARARRVQLQRQGCANAFLDLKGLRQHCALASADRLWLEQACERLNLSLRAAHRLLKVARTLADLEQVER
IARHHLGEALQYRPEPQP

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=776522 PJW05_RS25830 WP_271409768.1 5615953..5617449(+) (comM) [Pseudomonas sp. Q1-7]
ATGTCCCTGGCCATCGTCCACAGTCGCGCGCAGGTCGGCGTCGAAGCCCCTGCCGTGACCGTCGAAGCCCACCTCGCCAA
CGGTTTGCCGTCCCTGACCCTCGTGGGCCTGCCGGAGACCGCCGTGAAAGAGAGCAAGGACCGCGTGCGCAGCGCGATCC
AGAACAGCGGTTTCGACTTCCCACCCCGCCGCATCACCCTCAACCTCGCCCCGGCGGACCTGCCCAAGGATGGCGGTCGC
TTCGACCTCGCCATCGCCCTCGGCGTGCTCGCCGCCAGCGGCCAACTGCCGGCCAGCGCCCTGGAAGAGATCGAATGCCT
GGGCGAGCTGGCCCTCTCCGGCGCCCTGCGCCCGGTGCAGGGCGTACTGCCCGCCGCACTGGCCGCACGCGCCGCCGGGC
GCACCCTGGTGGTGCCACGGGAAAATGCCGAGGAGGCCAGCCTGGCCAGTGGCCTGAAGGTGCTGGCCGCCGGGCACCTG
CTGGAACTGACCGCGCACTTCGCCGGGCACACGCCCCTGGCCCCCTACGCCGCGACGGGTCTGCTGCAGGAACGCCCGCC
CTACCCCGACCTGGCCGACGTCCAGGGCCAGGCCGCCGCCAAGCGTGCCCTGCTGGTCGCCGCGGCCGGCTCCCACAACC
TGCTGTTCTGCGGGCCGCCGGGCACCGGCAAGACCCTGCTCGCCAGCCGTTTGCCCGGCCTGCTGCCGCCCCTGGAAGAA
CAGGAAGCCCTGGAAGTGGCCGCCATCCATTCGGTGGCCAGCCACGCACCGTTGCAGGCCTGGCCGCAACGGCCGTTCCG
GCAGCCGCATCACAGCGCCTCCGGCGCCGCGCTGGTGGGCGGCGGCAGTCGCCCAAAACCCGGCGAGATCACCCTGGCCC
ACCAGGGTGTTCTGTTCCTCGACGAATTGCCGGAGTTCGATCGCAAGGTGCTGGAAGTTCTTCGCGAACCCCTGGAAAGC
GGCGAAATCGTCATCGCCCGTGCCCATGACAAGGTGCGTTTCCCTGCGCGCTTCCAACTGGTCGCGGCCATGAACCCCTG
CCCCTGTGGATATCTCGGCGACCCCGGCGGACGCTGCCGCTGCACCCCGGAGCAGATCCAGCGCTACCGCACCAGGCTGT
CTGGCCCGCTGCTGGATCGCATCGACCTGCACCTGACCGTCGCCCGCGAAGCCACCGCCCTGGAGCCGCCCGCCAGTACC
GGCCCCGGCAGCGCGGAAGCGGCCGCCGAAGTGGCGCGGGCGCGGCGTGTGCAGCTCCAGCGCCAGGGCTGCGCCAATGC
CTTCCTCGACCTCAAGGGCCTGCGCCAGCATTGCGCCCTGGCCAGCGCCGACCGCCTCTGGCTGGAACAGGCCTGCGAAC
GCCTCAACCTGTCCCTGCGCGCCGCCCATCGACTGCTTAAAGTGGCGCGCACCCTGGCCGACCTGGAGCAGGTCGAGCGG
ATCGCCCGCCATCACCTGGGAGAAGCCCTGCAATATCGGCCCGAGCCCCAGCCTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.566

99.398

0.562
  comM Vibrio campbellii strain DS40M4

56.364

99.398

0.56
  comM Haemophilus influenzae Rd KW20

54.691

100

0.55
  comM Glaesserella parasuis strain SC1401

54.91

100

0.55
  comM Legionella pneumophila str. Paris

49.901

100

0.506
  comM Legionella pneumophila strain ERS1305867

49.901

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.817

100

0.462