Detailed information NTG0776496

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: PJW05_RS01390
• Genome accession: NZ_CP116304
• Coordinates: 290539..291684 (+)
• Length: 381 a.a.
• NCBI ID: WP_271410163.1
• Uniprot ID: -
• Organism: Pseudomonas sp. Q1-7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 285539..296684

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PJW05_RS01365	-	286880..287176 (-)	297	WP_271410158.1	DUF167 domain-containing protein	-
PJW05_RS01370	-	287173..287766 (-)	594	WP_271410159.1	YggT family protein	-
PJW05_RS01375	proC	287777..288595 (-)	819	WP_271410160.1	pyrroline-5-carboxylate reductase	-
PJW05_RS01380	-	288606..289301 (-)	696	WP_271410161.1	YggS family pyridoxal phosphate-dependent enzyme	-
PJW05_RS01385	pilT	289465..290499 (+)	1035	WP_271410162.1	type IV pilus twitching motility protein PilT	Machinery gene
PJW05_RS01390	pilU	290539..291684 (+)	1146	WP_271410163.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
PJW05_RS01395	-	291808..292203 (+)	396	WP_271410164.1	TM2 domain-containing protein	-
PJW05_RS01400	-	292448..293827 (+)	1380	WP_271410165.1	pyridoxal-phosphate dependent enzyme	-
PJW05_RS01405	-	293824..295008 (+)	1185	WP_271410166.1	PLP-dependent aspartate aminotransferase family protein	-
PJW05_RS01410	-	295050..295538 (-)	489	WP_271410167.1	TolC family protein	-
PJW05_RS01415	-	296411..296638 (-)	228	WP_271410168.1	LuxR C-terminal-related transcriptional regulator	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 42601.99 Da
• Isoelectric Point: 6.8268

>NTDB_id=776496 PJW05_RS01390 WP_271410163.1 290539..291684(+) (pilU) [Pseudomonas sp. Q1-7]
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGKIMPVSKNPMSPEMTRETVLGVMNEQQRRDFAEHHECNFAISARGIGR
FRVSAFYQRNLVGMVLRRIETTIPTIEELKLPEVLKKLSLTKRGLVLFVGATGTGKSTSLAAMIGHRNKNSSGHIISIED
PIEFIHQHQNCIVTQREVGIDTESFEVALKNTLRQAPDVILIGEVRTRETMDHAIAFAETGHLCLATLHANNANQALDRI
INFFPADRQQQVWMDLSLNLKAIVAQQLVPAPDGKGRRAVIEVLLNTPLAADLIRKGEVHELKGLMKRSTEHGMQTFDQA
LFNLYSQGEITYEDALLYADSANDLRLMIKLGSETDGEHLQHMSDGLSLQVTEEDPGRRFR

Nucleotide

• Length: 1146 bp

>NTDB_id=776496 PJW05_RS01390 WP_271410163.1 290539..291684(+) (pilU) [Pseudomonas sp. Q1-7]
ATGGAATTCGAGAAACTGCTGCGCCTGATGGTGGAAAAAGGTGGTTCCGACCTCTTCATCACCGCCGGCGTGCCGCCGTC
GATGAAGGTCAACGGCAAGATCATGCCGGTCAGCAAGAACCCCATGTCGCCGGAGATGACCCGGGAAACCGTGCTCGGCG
TGATGAACGAGCAGCAGCGCCGCGACTTCGCCGAGCACCACGAATGCAACTTCGCCATCAGTGCGCGGGGCATCGGCCGT
TTCCGCGTCAGCGCCTTCTACCAGCGCAACCTGGTGGGCATGGTGCTGCGCCGGATCGAGACGACCATCCCCACCATCGA
AGAGCTGAAACTCCCGGAAGTTCTCAAGAAGCTGTCGCTGACCAAGCGTGGCCTGGTGCTCTTCGTCGGCGCCACCGGCA
CCGGCAAGTCCACCTCCCTGGCGGCGATGATCGGCCACCGCAACAAGAACAGCAGCGGCCACATCATCTCCATCGAAGAC
CCGATCGAGTTCATCCACCAGCACCAGAACTGCATCGTTACCCAGCGCGAGGTGGGCATCGATACCGAATCCTTCGAGGT
GGCCCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCCTCATCGGCGAGGTGCGGACCCGCGAGACCATGGACCATG
CCATCGCCTTCGCCGAGACCGGCCACCTGTGCCTGGCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCCGCCGACCGGCAGCAGCAGGTGTGGATGGACCTGTCGCTGAACCTCAAGGCCATCGTCGCCCAGCA
ACTGGTGCCGGCCCCCGACGGCAAGGGCCGTCGCGCGGTGATCGAGGTACTGCTGAACACCCCGCTGGCCGCGGACCTGA
TCCGCAAGGGCGAGGTGCACGAACTCAAGGGCCTGATGAAGCGCTCCACTGAACACGGCATGCAGACCTTCGACCAGGCG
CTGTTCAACCTCTATTCCCAGGGTGAGATCACCTACGAGGACGCCCTGCTTTACGCCGACTCGGCCAACGACCTGCGGCT
GATGATCAAGCTCGGTTCGGAGACCGATGGCGAACACCTGCAGCACATGAGCGACGGCCTGTCCCTGCAGGTCACCGAGG
AAGACCCCGGACGCCGCTTCCGCTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (111-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	90.814	100	0.908
pilU	Acinetobacter baylyi ADP1	64.146	93.701	0.601
pilU	Vibrio cholerae strain A1552	58.857	91.864	0.541
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	44.643	88.189	0.394