Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | PI860_RS03930 | Genome accession | NZ_CP116258 |
| Coordinates | 820488..820808 (+) | Length | 106 a.a. |
| NCBI ID | WP_005318073.1 | Uniprot ID | A4SJ96 |
| Organism | Aeromonas salmonicida subsp. salmonicida strain J225 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 815488..825808
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PI860_RS03905 (PI860_03910) | trhA | 816113..816748 (-) | 636 | WP_005318058.1 | PAQR family membrane homeostasis protein TrhA | - |
| PI860_RS03910 (PI860_03915) | - | 816973..818508 (+) | 1536 | WP_005318060.1 | pyridoxal-dependent decarboxylase | - |
| PI860_RS03915 (PI860_03920) | - | 818594..819145 (+) | 552 | WP_005318063.1 | septation protein A | - |
| PI860_RS03920 (PI860_03925) | - | 819172..819468 (+) | 297 | WP_005318066.1 | YciI family protein | - |
| PI860_RS03925 (PI860_03930) | cysQ | 819550..820320 (-) | 771 | WP_005318069.1 | 3'(2'),5'-bisphosphate nucleotidase CysQ | - |
| PI860_RS03930 (PI860_03935) | comEA | 820488..820808 (+) | 321 | WP_005318073.1 | ComEA family DNA-binding protein | Machinery gene |
| PI860_RS03935 (PI860_03940) | galU | 820903..821814 (+) | 912 | WP_005318075.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| PI860_RS03940 (PI860_03945) | - | 822028..823425 (+) | 1398 | WP_011898384.1 | peptide MFS transporter | - |
| PI860_RS03945 (PI860_03950) | - | 823457..824428 (-) | 972 | WP_011898383.1 | response regulator | - |
| PI860_RS03950 (PI860_03955) | - | 824782..825480 (+) | 699 | WP_005318084.1 | DnaT-like ssDNA-binding domain-containing protein | - |
Sequence
Protein
Download Length: 106 a.a. Molecular weight: 11222.15 Da Isoelectric Point: 10.0215
>NTDB_id=776415 PI860_RS03930 WP_005318073.1 820488..820808(+) (comEA) [Aeromonas salmonicida subsp. salmonicida strain J225]
MNYKILTATLLLSCLPLLSQPLLAADKPAAKPATTVTTAKESGKVNLNTASINELTALKGIGEKKAQAIVDFRQKQGKFT
TVEQLADVSGIGPATLEANRDMIIVK
MNYKILTATLLLSCLPLLSQPLLAADKPAAKPATTVTTAKESGKVNLNTASINELTALKGIGEKKAQAIVDFRQKQGKFT
TVEQLADVSGIGPATLEANRDMIIVK
Nucleotide
Download Length: 321 bp
>NTDB_id=776415 PI860_RS03930 WP_005318073.1 820488..820808(+) (comEA) [Aeromonas salmonicida subsp. salmonicida strain J225]
ATGAACTACAAAATCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCCCTGCTCAGCCAGCCTTTGCTGGCCGCCGACAA
GCCGGCTGCCAAGCCAGCGACCACGGTCACCACCGCCAAGGAGAGTGGCAAGGTGAACCTGAATACGGCCAGTATCAATG
AGTTAACTGCCCTCAAGGGGATCGGAGAGAAGAAGGCGCAGGCCATCGTCGATTTTCGTCAGAAACAGGGCAAGTTCACC
ACGGTTGAACAACTGGCGGATGTCAGCGGCATAGGGCCGGCCACTCTGGAAGCAAATCGGGACATGATCATCGTCAAATA
G
ATGAACTACAAAATCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCCCTGCTCAGCCAGCCTTTGCTGGCCGCCGACAA
GCCGGCTGCCAAGCCAGCGACCACGGTCACCACCGCCAAGGAGAGTGGCAAGGTGAACCTGAATACGGCCAGTATCAATG
AGTTAACTGCCCTCAAGGGGATCGGAGAGAAGAAGGCGCAGGCCATCGTCGATTTTCGTCAGAAACAGGGCAAGTTCACC
ACGGTTGAACAACTGGCGGATGTCAGCGGCATAGGGCCGGCCACTCTGGAAGCAAATCGGGACATGATCATCGTCAAATA
G
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
50 |
100 |
0.519 |
| comEA | Vibrio cholerae strain A1552 |
50 |
100 |
0.519 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
46.392 |
91.509 |
0.425 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
42.453 |
100 |
0.425 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
61.905 |
59.434 |
0.368 |