Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KK030_RS01525 Genome accession   NZ_CP116249
Coordinates   318435..318959 (+) Length   174 a.a.
NCBI ID   WP_193149017.1    Uniprot ID   -
Organism   Enterobacter roggenkampii strain 120063     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 313435..323959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KK030_RS01505 (KK030_01505) aphA 313758..314471 (+) 714 WP_021242762.1 acid phosphatase AphA -
  KK030_RS01510 (KK030_01510) - 314585..315001 (+) 417 WP_008503381.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KK030_RS01515 (KK030_01515) - 315004..315357 (+) 354 WP_008503382.1 MmcQ/YjbR family DNA-binding protein -
  KK030_RS01520 (KK030_01520) uvrA 315361..318183 (-) 2823 WP_008503383.1 excinuclease ABC subunit UvrA -
  KK030_RS01525 (KK030_01525) ssb 318435..318959 (+) 525 WP_193149017.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KK030_RS01530 (KK030_01530) - 319022..319303 (-) 282 WP_008503385.1 YjcB family protein -
  KK030_RS01535 (KK030_01535) - 319940..321505 (+) 1566 WP_214573515.1 EAL domain-containing protein -
  KK030_RS01540 (KK030_01540) soxS 321512..321838 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  KK030_RS01545 (KK030_01545) soxR 321938..322396 (+) 459 WP_008503388.1 redox-sensitive transcriptional activator SoxR -
  KK030_RS01550 (KK030_01550) - 322771..323442 (+) 672 WP_008503389.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18583.57 Da        Isoelectric Point: 5.2456

>NTDB_id=776372 KK030_RS01525 WP_193149017.1 318435..318959(+) (ssb) [Enterobacter roggenkampii strain 120063]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRSQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=776372 KK030_RS01525 WP_193149017.1 318435..318959(+) (ssb) [Enterobacter roggenkampii strain 120063]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACCACTGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGCTGGGGTC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTTCGCAGCAGCAGTCTGCTCCGGCGCCG
TCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.556

100

0.782
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

46.629

100

0.477
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.477
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.368