Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QVN05_RS22790 Genome accession   NZ_CP128912
Coordinates   4690504..4691040 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain TUM13773     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4685504..4696040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVN05_RS22770 (QVN05_22770) soxR 4687233..4687697 (-) 465 WP_289415187.1 redox-sensitive transcriptional activator SoxR -
  QVN05_RS22775 (QVN05_22775) soxS 4687783..4688106 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QVN05_RS22780 (QVN05_22780) pdeC 4688142..4689695 (-) 1554 WP_289942588.1 c-di-GMP phosphodiesterase PdeC -
  QVN05_RS22785 (QVN05_22785) yjcB 4690124..4690405 (+) 282 WP_001296643.1 YjcB family protein -
  QVN05_RS22790 (QVN05_22790) ssb 4690504..4691040 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QVN05_RS22795 (QVN05_22795) uvrA 4691295..4694117 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  QVN05_RS22800 (QVN05_22800) yjbR 4694152..4694508 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  QVN05_RS22805 (QVN05_22805) yjbQ 4694512..4694928 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QVN05_RS22810 (QVN05_22810) aphA 4695039..4695752 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=775794 QVN05_RS22790 WP_000168305.1 4690504..4691040(-) (ssb) [Escherichia coli strain TUM13773]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=775794 QVN05_RS22790 WP_000168305.1 4690504..4691040(-) (ssb) [Escherichia coli strain TUM13773]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489