Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H7R81_RS00980 Genome accession   NZ_AP022290
Coordinates   196938..198452 (-) Length   504 a.a.
NCBI ID   WP_182970168.1    Uniprot ID   -
Organism   Aeromonas veronii strain WP9-W18-ESBL-04     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 191938..203452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R81_RS00950 (WP9W18E04_01770) pncB 191965..193143 (-) 1179 WP_111807238.1 nicotinate phosphoribosyltransferase -
  H7R81_RS00955 (WP9W18E04_01780) - 193145..193780 (-) 636 WP_042062463.1 nicotinamidase -
  H7R81_RS00960 (WP9W18E04_01790) - 193855..194505 (+) 651 WP_075111949.1 NUDIX hydrolase -
  H7R81_RS00965 (WP9W18E04_01800) - 194502..195014 (+) 513 WP_182970166.1 DUF523 domain-containing protein -
  H7R81_RS00970 (WP9W18E04_01810) - 194930..195904 (-) 975 WP_182970167.1 acyltransferase -
  H7R81_RS00975 (WP9W18E04_01820) - 195911..196810 (-) 900 WP_139409837.1 acyltransferase -
  H7R81_RS00980 (WP9W18E04_01830) comM 196938..198452 (-) 1515 WP_182970168.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H7R81_RS00985 (WP9W18E04_01840) ilvG 198838..200484 (+) 1647 WP_182970169.1 acetolactate synthase 2 catalytic subunit -
  H7R81_RS00990 (WP9W18E04_01850) ilvM 200481..200759 (+) 279 WP_005339613.1 acetolactate synthase 2 small subunit -
  H7R81_RS00995 (WP9W18E04_01860) - 200772..201716 (+) 945 WP_182970170.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54571.47 Da        Isoelectric Point: 7.4492

>NTDB_id=77549 H7R81_RS00980 WP_182970168.1 196938..198452(-) (comM) [Aeromonas veronii strain WP9-W18-ESBL-04]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQTTDALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKADRG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREMEDICRLSAQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=77549 H7R81_RS00980 WP_182970168.1 196938..198452(-) (comM) [Aeromonas veronii strain WP9-W18-ESBL-04]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAAGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAACTTCGAGTTTCCGAGCAAACACATCACAGTCAATCTGGCTCCCGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCCTCCAAACAAATACCCGCAAAATACCTGCTCGATCACGAATTTTT
GGGCGAATTGGCCCTGACCGGCGAGATCCGTCCCGTGCTCGGCGTACTGCCTGCCGTGCTCGCCTGCCGGGATGCGGGAC
GCACCCTGCTGGTACCGCGGGAGAACGGCCCGGAAGCCTCGCTCATTCAGGATGCCGAGGTGCGCACCGCCCACCAACTG
CTGGCCGTCACCGCCTGGCTGGCGGGCCAATACGAGCTGCCGCTGCCGGATCCCCAGACCACGGATGCCCTGCCCGATGT
ACCGGATCTGCAGGATGTGATCGGTCAGTCTCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACTGGCAAGAGCATGTTGGCCAGCCGTCTGCCCGGCATCTTGCCGCCACTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGTGGCCTCACCCCGCGCGCCGGTCACTGGCATCACAGGCCCTATCG
CACGCCGCACCACAGCGCCTCGGCGGTGGCGCTGGTGGGAGGCGGCAGCCACCCAAGGCCCGGTGAAATTTCGTTGGCCC
ACAACGGAGTGCTGTTTCTGGATGAATTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAACCGCTGGAGACA
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTCGATTTTCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAACCCCAG
CCCTTGCGGACACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAAATCCTTCGCTATCTCGGCAAACTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAAGTGCCACTGCTACCCAAGGGGAGTCTGACCGGCAAGGCGGATCGGGGG
GAGTCGAGCCAGCAGATCCGCGATCGGGTACTGGCGGCACGGGAACGCATGCTGAGCCGTAACGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATGGAGGATATTTGCCGCTTATCGGCGCAAGATGCCGAGTTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGTATCCGGGCCTGGCACCGCATCCTGCGGGTGTCGCGCACCATCGCCGATCTGGCGGGACAACCGGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGATCGGCTGCTGTCGCGGCTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Vibrio campbellii strain DS40M4

61.952

99.603

0.617
  comM Haemophilus influenzae Rd KW20

61.265

100

0.615
  comM Glaesserella parasuis strain SC1401

60.158

100

0.605
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.462

Multiple sequence alignment