Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   QU520_RS01800 Genome accession   NZ_CP128613
Coordinates   393206..394444 (+) Length   412 a.a.
NCBI ID   WP_000816018.1    Uniprot ID   -
Organism   Escherichia coli strain WL297     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 388206..399444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU520_RS01775 (QU520_01775) mrcA 388486..391038 (-) 2553 WP_001562196.1 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA -
  QU520_RS01780 (QU520_01780) hofM 391158..391937 (+) 780 WP_001353630.1 DNA utilization protein HofM -
  QU520_RS01785 (QU520_01785) hofN 391937..392476 (+) 540 WP_001069345.1 PilN domain-containing protein -
  QU520_RS01790 (QU520_01790) hofO 392460..392900 (+) 441 WP_000367369.1 DNA utilization protein HofO -
  QU520_RS01795 (QU520_01795) hofP 392890..393294 (+) 405 WP_001353632.1 DNA utilization protein HofP -
  QU520_RS01800 (QU520_01800) comE 393206..394444 (+) 1239 WP_000816018.1 DNA uptake porin HofQ Machinery gene
  QU520_RS01805 (QU520_01805) aroK 394845..395366 (+) 522 WP_000818618.1 shikimate kinase AroK -
  QU520_RS01810 (QU520_01810) aroB 395423..396511 (+) 1089 WP_000439850.1 3-dehydroquinate synthase -
  QU520_RS01815 (QU520_01815) damX 396603..397889 (+) 1287 WP_000343195.1 cell division protein DamX -
  QU520_RS01820 (QU520_01820) dam 397996..398832 (+) 837 WP_000742150.1 adenine-specific DNA-methyltransferase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44695.21 Da        Isoelectric Point: 5.9488

>NTDB_id=775074 QU520_RS01800 WP_000816018.1 393206..394444(+) (comE) [Escherichia coli strain WL297]
MKQWIAALLLMLIPSVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGL
ITRQEGNILSVHSVAWQNDNIARQEAEQARVQASLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDN
KAALSALEQWVAQMDLPVGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLSVATATTHVGFNIGRIN
GRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKL
HISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERREL
VVFITPRLVSSE

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=775074 QU520_RS01800 WP_000816018.1 393206..394444(+) (comE) [Escherichia coli strain WL297]
ATGAAGCAATGGATAGCCGCACTACTGTTGATGCTGATACCCAGCGTACAGGCGGCAAAGCCGCAAAAAGTGACGCTGAT
GGTGGATGACGTTCCGGTAGCTCAGGTGTTGCAGGCGCTGGCTGAACAGGAGAAGTTGAACCTGGTGGTGTCGCCAGACG
TCAGCGGTACGGTGTCATTACATCTAACAGATGTTCCCTGGAAGCAGGCGCTACAAACTGTAGTGAAAAGCGCCGGGCTA
ATAACGCGTCAGGAGGGCAACATTCTCTCGGTGCATTCCGTTGCCTGGCAGAATGACAATATCGCCCGTCAGGAGGCTGA
ACAGGCGCGGGTGCAGGCAAGTCTGCCGCTGGAAAATCGTAGTATAACCCTGCAATACGCCGACGCGGGAGAACTGGCGA
AAGCAGGGGAGAAACTACTGAGTGCTAAAGGGAGTATGACCGTTGATAAACGTACCAATCGCCTTTTGCTGCGAGATAAC
AAAGCGGCGTTAAGCGCGCTTGAACAGTGGGTAGCGCAAATGGATCTGCCGGTCGGGCAGGTTGAGCTGTCGGCGCATAT
TGTCACCATTAATGAAAAAAGTTTGCGTGAGTTAGGCGTGAAATGGACGTTGGCTGATGCGCAACAAGCTGGTGGCGTTG
GGCAAGTCACCACGCTTGGCAGCGACCTCTCCGTAGCGACGGCGACAACGCATGTCGGTTTTAACATTGGACGCATCAAC
GGACGTTTACTGGATCTTGAGCTTTCCGCGCTCGAACAAAAACAGCAGCTGGATATTATCGCCAGTCCGCGTCTGCTGGC
CTCACATCTTCAGCCTGCCAGCATTAAACAGGGGAGCGAAATTCCATATCAGGTTTCCAGCGGGGAAAGTGGCGCGACGT
CGGTGGAATTTAAAGAGGCCGTCCTGGGGATGGAAGTTACGCCCACGGTGTTACAAAAAGGTCGCATCCGGCTGAAATTA
CACATCAGCCAGAACGTTCCGGGGCAGGTGCTACAGCAGGCCGATGGCGAAGTGCTGGCGATTGATAAGCAGGAGATCGA
AACGCAGGTCGAGGTCAAAAGCGGAGAAACGTTGGCGCTGGGTGGTATTTTTACCCGTAAAAATAAATCGGGTCAGGATA
GCGTACCGTTGCTTGGTGACATTCCCTGGTTCGGGCAATTATTTCGTCATGACGGAAAAGAAGATGAACGACGCGAGTTA
GTGGTGTTTATCACGCCACGACTGGTTTCCAGTGAGTAA

Domains

Predicted by InterProScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(120-179)

Bacterial type II and III secretion system protein (Secretin)

(250-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Haemophilus influenzae 86-028NP

37.071

100

0.393
  comE Haemophilus influenzae Rd KW20

36.927

100

0.391
  pilQ Vibrio campbellii strain DS40M4

38.242

100

0.391
  pilQ Vibrio cholerae strain A1552

37.772

100

0.379
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

37.772

100

0.379
  comE Glaesserella parasuis strain SC1401

36.105

100

0.369
  pilQ Pseudomonas aeruginosa PAK

34.862

100

0.369