Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QU520_RS01255 Genome accession   NZ_CP128613
Coordinates   275821..276585 (-) Length   254 a.a.
NCBI ID   WP_103253587.1    Uniprot ID   -
Organism   Escherichia coli strain WL297     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 270821..281585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU520_RS01240 (QU520_01240) yhhJ 273479..274603 (+) 1125 WP_001314210.1 ABC transporter permease -
  QU520_RS01245 (QU520_01245) nikR 274612..275013 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  QU520_RS01250 (QU520_01250) nikE 275018..275824 (-) 807 WP_000173700.1 nickel import ATP-binding protein NikE -
  QU520_RS01255 (QU520_01255) amiE 275821..276585 (-) 765 WP_103253587.1 nickel import ATP-binding protein NikD Regulator
  QU520_RS01260 (QU520_01260) nikC 276585..277418 (-) 834 WP_106907719.1 nickel ABC transporter permease subunit NikC -
  QU520_RS01265 (QU520_01265) nikB 277415..278359 (-) 945 WP_000947081.1 nickel ABC transporter permease subunit NikB -
  QU520_RS01270 (QU520_01270) nikA 278359..279933 (-) 1575 WP_289787410.1 nickel ABC transporter substrate-binding protein -
  QU520_RS01275 (QU520_01275) acpT 280044..280631 (-) 588 WP_000285768.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26839.43 Da        Isoelectric Point: 6.6882

>NTDB_id=775072 QU520_RS01255 WP_103253587.1 275821..276585(-) (amiE) [Escherichia coli strain WL297]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCQALGKPADDATLIAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=775072 QU520_RS01255 WP_103253587.1 275821..276585(-) (amiE) [Escherichia coli strain WL297]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAACCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGTGGTAGCGGGAAGTCGCTGACCTGCGCTGCGACACTGGGCATTCTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTGGCCGATGGCAAACCGGTTTCTCCCTGCGCCCTGCGCGGTATCAAA
ATTGCCACTATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTGCACACCATGCACACGCACGCGCGGGAAACTTGCCA
GGCACTGGGGAAACCCGCCGATGACGCCACGCTTATCGCCGCTATAGAAGCGGTAGGGCTGGAAAACGCCGCACGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCAGTGCTATGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGATCTTGATGTAGTAGCGCAAGCACGCATTCTGGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTGGCAGACGATGTGGCGGTGA
TGTCTCACGGTAAGATTGTTGAGCAGGGCGATGTCGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCTGCTCACCTCGCGCTTTATGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398