Detailed information NTG0775072

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: PF976_RS20400
• Genome accession: NZ_CP116011
• Coordinates: 3324094..3324783 (-)
• Length: 229 a.a.
• NCBI ID: WP_198315882.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain SRCM124317
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3319094..3329783

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PF976_RS17240 (PF976_17240)	fliW	3319184..3319615 (-)	432	WP_007407475.1	flagellar assembly protein FliW	-
PF976_RS17245 (PF976_17245)	-	3319645..3320214 (-)	570	WP_014471091.1	DUF6470 family protein	-
PF976_RS17250 (PF976_17250)	flgL	3320306..3321223 (-)	918	WP_013353778.1	flagellar hook-associated protein FlgL	-
PF976_RS17255 (PF976_17255)	flgK	3321235..3322752 (-)	1518	WP_014471092.1	flagellar hook-associated protein FlgK	-
PF976_RS17260 (PF976_17260)	-	3322768..3323250 (-)	483	WP_013353780.1	flagellar protein FlgN	-
PF976_RS17265 (PF976_17265)	flgM	3323265..3323531 (-)	267	WP_013353781.1	flagellar biosynthesis anti-sigma factor FlgM	-
PF976_RS17270 (PF976_17270)	-	3323601..3324020 (-)	420	WP_013353782.1	TIGR03826 family flagellar region protein	-
PF976_RS20400	comFC	3324094..3324783 (-)	690	WP_198315882.1	ComF family protein	Machinery gene
PF976_RS17285 (PF976_17285)	-	3324789..3325073 (-)	285	WP_013353784.1	late competence development ComFB family protein	-
PF976_RS17290 (PF976_17290)	comFA	3325132..3326517 (-)	1386	WP_013353785.1	DEAD/DEAH box helicase	Machinery gene
PF976_RS17295 (PF976_17295)	-	3326624..3327472 (-)	849	WP_013353786.1	DegV family protein	-
PF976_RS17300 (PF976_17300)	degU	3327569..3328258 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
PF976_RS17305 (PF976_17305)	degS	3328335..3329498 (-)	1164	WP_013353787.1	two-component sensor histidine kinase DegS	Regulator

Sequence

Protein

• Length: 229 a.a.
• Molecular weight: 25295.06 Da
• Isoelectric Point: 8.6865

>NTDB_id=775072 PF976_RS20400 WP_198315882.1 3324094..3324783(-) (comFC) [Bacillus amyloliquefaciens strain SRCM124317]
MNCLLCDSPISRSLTWSSLFSLAPEQEVCSACSNQFEKIEGPVCSLCGRPQQSNKKCADCMARESKTEQRFLLRQNRSVF
LYNDAMKDSLARFKFRGDTKIIQTFERDFTAGFKAAYPANTHILVPIPLSPERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAGALLTAGKALSVSSFTLIRS

Nucleotide

• Length: 690 bp

>NTDB_id=775072 PF976_RS20400 WP_198315882.1 3324094..3324783(-) (comFC) [Bacillus amyloliquefaciens strain SRCM124317]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGATCACTGACTTGGAGTTCTCTATTTTCTCTGGCGCCGGAGCAAGA
GGTATGCAGCGCATGCAGCAATCAATTTGAAAAAATCGAAGGCCCCGTGTGCAGTTTATGCGGAAGGCCTCAGCAGTCAA
ACAAAAAATGCGCTGACTGCATGGCGCGGGAATCAAAAACGGAACAGCGCTTTTTGTTGCGGCAGAACCGTTCGGTTTTT
TTGTATAATGATGCAATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATACGAAAATCATTCAAACATTTGAACG
TGATTTTACTGCCGGCTTTAAAGCGGCATATCCGGCAAATACACATATCCTCGTCCCTATTCCGCTGAGCCCCGAACGGC
TGGCGGAGCGCGGATTTAATCAATCCGAGCTGCTGGCCTCGCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTCTCCGCAGAAAAAAAGTTTTCAGCTGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCTGCCGGAGCTCTGCTGA
CAGCAGGCAAAGCGTTATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (171-227)

• Double zinc ribbon domain (DZR_2) (2-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	59.471	99.127	0.59
comFC/cflB	Streptococcus mitis NCTC 12261	36.245	100	0.362
comFC/cflB	Streptococcus pneumoniae Rx1	35.931	100	0.362
comFC/cflB	Streptococcus pneumoniae D39	35.931	100	0.362
comFC/cflB	Streptococcus pneumoniae R6	35.931	100	0.362