Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   PF976_RS17290 Genome accession   NZ_CP116011
Coordinates   3325132..3326517 (-) Length   461 a.a.
NCBI ID   WP_013353785.1    Uniprot ID   A0A9P1NJB2
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3320132..3331517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS17250 (PF976_17250) flgL 3320306..3321223 (-) 918 WP_013353778.1 flagellar hook-associated protein FlgL -
  PF976_RS17255 (PF976_17255) flgK 3321235..3322752 (-) 1518 WP_014471092.1 flagellar hook-associated protein FlgK -
  PF976_RS17260 (PF976_17260) - 3322768..3323250 (-) 483 WP_013353780.1 flagellar protein FlgN -
  PF976_RS17265 (PF976_17265) flgM 3323265..3323531 (-) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  PF976_RS17270 (PF976_17270) - 3323601..3324020 (-) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  PF976_RS20400 comFC 3324094..3324783 (-) 690 WP_198315882.1 ComF family protein Machinery gene
  PF976_RS17285 (PF976_17285) - 3324789..3325073 (-) 285 WP_013353784.1 late competence development ComFB family protein -
  PF976_RS17290 (PF976_17290) comFA 3325132..3326517 (-) 1386 WP_013353785.1 DEAD/DEAH box helicase Machinery gene
  PF976_RS17295 (PF976_17295) - 3326624..3327472 (-) 849 WP_013353786.1 DegV family protein -
  PF976_RS17300 (PF976_17300) degU 3327569..3328258 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PF976_RS17305 (PF976_17305) degS 3328335..3329498 (-) 1164 WP_013353787.1 two-component sensor histidine kinase DegS Regulator
  PF976_RS17310 (PF976_17310) - 3329721..3330368 (+) 648 WP_013353788.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52689.28 Da        Isoelectric Point: 10.2042

>NTDB_id=775059 PF976_RS17290 WP_013353785.1 3325132..3326517(-) (comFA) [Bacillus amyloliquefaciens strain SRCM124317]
MSGGASEFSKVRDFFYGRHLLRSEIPFSDQCIKRFIEKEYITAEPSVIRRKNRYVCRRCGQSDQARFAVFWAPSAKRHIT
YCRSCVVMGRADELTSLYSWNLAAENSWEPIKLSWEGTLTDGQKQAAEALIEAIKEKQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGSLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKRAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLEKGKLPRSVTDWV
RQKLQSRLPVFLFVPSVHILRKTTDYFQKLNIRAEGVHAEDTCRKDKVKRFREGRFDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEYMNKLAQKNKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=775059 PF976_RS17290 WP_013353785.1 3325132..3326517(-) (comFA) [Bacillus amyloliquefaciens strain SRCM124317]
ATGTCCGGAGGTGCTTCAGAATTTTCGAAGGTGCGGGATTTCTTTTACGGCAGGCATTTATTGAGATCTGAGATTCCGTT
TTCTGATCAGTGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAGTCATCCGCCGGAAAAACCGTT
ATGTCTGCCGCCGATGCGGCCAGTCTGACCAAGCCCGCTTTGCGGTATTTTGGGCGCCCTCTGCCAAAAGACATATTACC
TATTGCCGTTCCTGTGTCGTAATGGGAAGGGCTGATGAACTGACGTCATTATACTCTTGGAATCTAGCGGCTGAAAACAG
CTGGGAGCCTATCAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCGGAAGCGCTTATAGAAGCGA
TAAAAGAGAAACAAGAGCTGCTGGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATAGAGTTT
GCGCTGAATCACGGCTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGTGAGGACAAAGGCAGCTTGACTCCGCTAATGATCTCAA
CCGCTCACCAGCTGATGCGCTATCGAGATATTTTTGATGTAATGATAATAGATGAAGTAGATGCTTTTCCTTTTTCAGCT
GATGAGACATTAAGATTTGCGGTTGATAAAGCCAGAAAGAAAAACAGCGCCCTAGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAGGGCTGAGGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCGCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTGAGAAAGGAAAACTGCCGCGTTCTGTAACGGATTGGGTC
CGGCAAAAACTTCAATCACGACTGCCGGTTTTCTTATTCGTTCCGTCTGTACATATATTAAGAAAGACAACGGATTATTT
TCAGAAATTAAACATCCGTGCAGAAGGCGTGCATGCGGAAGACACATGCAGAAAGGATAAAGTGAAACGGTTCAGAGAGG
GACGGTTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTACCTAAAGTCCAGACTTGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCACTCGTACAGATTGCAGGCAGAACGGGCAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGTATGAAGAAAGCAAAAAAACATATAGAATATATGAACAAATTGG
CACAAAAAAATAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(329-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.02

99.132

0.625