Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   PF976_RS17300 Genome accession   NZ_CP116011
Coordinates   3327569..3328258 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3322569..3333258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS17260 (PF976_17260) - 3322768..3323250 (-) 483 WP_013353780.1 flagellar protein FlgN -
  PF976_RS17265 (PF976_17265) flgM 3323265..3323531 (-) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  PF976_RS17270 (PF976_17270) - 3323601..3324020 (-) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  PF976_RS20400 comFC 3324094..3324783 (-) 690 WP_198315882.1 ComF family protein Machinery gene
  PF976_RS17285 (PF976_17285) - 3324789..3325073 (-) 285 WP_013353784.1 late competence development ComFB family protein -
  PF976_RS17290 (PF976_17290) comFA 3325132..3326517 (-) 1386 WP_013353785.1 DEAD/DEAH box helicase Machinery gene
  PF976_RS17295 (PF976_17295) - 3326624..3327472 (-) 849 WP_013353786.1 DegV family protein -
  PF976_RS17300 (PF976_17300) degU 3327569..3328258 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PF976_RS17305 (PF976_17305) degS 3328335..3329498 (-) 1164 WP_013353787.1 two-component sensor histidine kinase DegS Regulator
  PF976_RS17310 (PF976_17310) - 3329721..3330368 (+) 648 WP_013353788.1 YigZ family protein -
  PF976_RS17315 (PF976_17315) - 3330373..3331647 (+) 1275 WP_013353789.1 LCP family protein -
  PF976_RS17320 (PF976_17320) - 3331747..3332823 (-) 1077 WP_013353790.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=775060 PF976_RS17300 WP_003219701.1 3327569..3328258(-) (degU) [Bacillus amyloliquefaciens strain SRCM124317]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=775060 PF976_RS17300 WP_003219701.1 3327569..3328258(-) (degU) [Bacillus amyloliquefaciens strain SRCM124317]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAAGCGGCTCGTATCGTCGAGCATTATCATCCCGATGTCGTCA
TAATGGATATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAGCAGCTTGTTGAGCTGTACCCTGAATCTAAGGTA
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCGGATACTTTAATCGAGGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCACCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCTGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1