Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PE066_RS10795 Genome accession   NZ_CP116009
Coordinates   2303190..2304713 (+) Length   507 a.a.
NCBI ID   WP_271232546.1    Uniprot ID   -
Organism   Ramlibacter tataouinensis strain DMF-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2298190..2309713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PE066_RS10775 (PE066_10775) - 2299581..2300840 (+) 1260 WP_271236557.1 nitrous oxide reductase family maturation protein NosD -
  PE066_RS10780 (PE066_10780) - 2300812..2301747 (+) 936 WP_271232543.1 ABC transporter ATP-binding protein -
  PE066_RS10785 (PE066_10785) - 2301759..2302574 (+) 816 WP_271232544.1 ABC transporter permease -
  PE066_RS10790 (PE066_10790) - 2302571..2303098 (+) 528 WP_271232545.1 nitrous oxide reductase accessory protein NosL -
  PE066_RS10795 (PE066_10795) comM 2303190..2304713 (+) 1524 WP_271232546.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PE066_RS10800 (PE066_10800) - 2304724..2305710 (-) 987 WP_271232547.1 YihY/virulence factor BrkB family protein -
  PE066_RS10805 (PE066_10805) metH 2305785..2308508 (-) 2724 WP_271232548.1 methionine synthase -
  PE066_RS10810 (PE066_10810) - 2308692..2309681 (+) 990 WP_271232549.1 Bug family tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 53539.36 Da        Isoelectric Point: 8.5229

>NTDB_id=774913 PE066_RS10795 WP_271232546.1 2303190..2304713(+) (comM) [Ramlibacter tataouinensis strain DMF-7]
MSLSLVRSRALLGLEAAQVEVEVHLANGLPNFFLVGLADTEVKEARERVRAALLTSGFAFPHNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQLDGERLLPYEFAGELSLSGELRPVRGALAMSLALQSAGADTQLVLPAGSAEEAALVPGARVWRA
RHLTDVVAQFQRGEPVASGEGWQRVQRRPPSAPAAYPDLADVKGQGGAKRALEIAAAGSHSLLLVGPPGSGKSMLAQRFA
GLLPPMEVQEALESAAIASLAGRFGLERWAVRPTCAPHHSASAVALVGGGSPPRPGEISLAHRGVLFLDELPEFPRAALE
ALREPLETGHITIARAARRAEFPARFQFIAAMNPCPCGWLGAPHRACRCGPDQVSRYQSRLSGPLLDRIDLQVEVPAVTP
HELLAAPAGEGTAAVRARCLAARERALARQGKPNQALEGAEVDTHARLLPASAAFLDHAAARLAWSARATHRVLKVARTI
ADLAAASDVEVAHVAEAVQYRRGLQGH

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=774913 PE066_RS10795 WP_271232546.1 2303190..2304713(+) (comM) [Ramlibacter tataouinensis strain DMF-7]
ATGAGCCTGTCGCTAGTACGCAGCCGCGCGCTGCTCGGCCTGGAGGCCGCCCAGGTCGAAGTCGAGGTCCACCTGGCCAA
CGGCCTGCCCAACTTCTTCCTGGTCGGGCTGGCCGACACCGAGGTCAAGGAGGCCCGCGAGCGCGTGCGCGCCGCCCTGC
TGACCAGCGGCTTCGCCTTTCCCCACAACAAGCGCATCACGGTCAACCTGGCGCCGGCCGACCTGCCCAAGGACTCGGGC
CGCTTCGACCTGCCGATCGCGCTGGGCATCCTGGCCGCCAGCGGCCAGCTCGATGGCGAGCGGCTGCTGCCCTACGAGTT
CGCCGGCGAGTTGTCGCTGTCCGGGGAATTGCGTCCGGTGCGCGGCGCCCTGGCCATGAGCCTCGCGCTGCAATCGGCTG
GCGCGGACACGCAGCTCGTGCTGCCTGCGGGCAGCGCGGAGGAAGCGGCGCTGGTGCCCGGTGCACGGGTCTGGCGCGCC
CGCCACCTGACCGACGTGGTGGCGCAGTTCCAGCGCGGCGAGCCGGTAGCCTCCGGCGAGGGCTGGCAACGCGTGCAGCG
CCGGCCCCCCAGCGCGCCGGCCGCCTACCCCGACCTGGCGGACGTGAAGGGCCAGGGCGGCGCCAAGCGGGCCCTGGAGA
TCGCGGCGGCCGGCTCGCACAGCCTGCTGCTGGTCGGCCCGCCGGGCTCGGGCAAATCGATGCTGGCGCAGCGCTTTGCC
GGGCTGCTGCCGCCGATGGAGGTGCAGGAAGCGCTGGAGAGCGCCGCCATCGCCAGCCTGGCCGGCCGGTTCGGCCTGGA
GCGCTGGGCGGTGCGCCCGACCTGCGCGCCGCACCACTCCGCCAGCGCGGTGGCGCTGGTGGGCGGCGGCTCCCCGCCGC
GGCCGGGCGAGATCTCGCTGGCGCACCGCGGCGTGCTGTTCCTCGATGAGCTGCCCGAGTTCCCGCGCGCGGCGCTCGAG
GCCTTGCGCGAACCGCTGGAGACCGGGCACATCACCATCGCGCGGGCGGCGCGCCGGGCCGAGTTCCCGGCCCGGTTCCA
GTTCATCGCGGCCATGAACCCCTGCCCCTGCGGTTGGCTGGGCGCGCCGCACCGGGCCTGCCGCTGCGGACCCGACCAGG
TCAGCCGCTACCAGTCGCGCCTGTCCGGCCCGCTGCTCGATCGCATCGACCTGCAGGTGGAGGTGCCGGCCGTCACGCCG
CACGAGTTGCTGGCGGCGCCGGCGGGCGAAGGCACGGCGGCCGTGCGCGCGCGTTGCCTGGCGGCGCGCGAGCGGGCCCT
GGCGCGGCAGGGCAAGCCGAACCAGGCGCTGGAGGGCGCCGAGGTGGACACGCACGCGCGCCTGCTGCCGGCTTCGGCCG
CCTTCCTCGACCACGCCGCCGCGCGCCTGGCCTGGAGCGCGCGGGCCACCCACCGGGTGCTGAAGGTCGCGCGCACCATT
GCCGACCTGGCGGCGGCGAGCGACGTCGAAGTGGCCCACGTGGCCGAGGCAGTGCAGTACCGGCGCGGGCTGCAGGGCCA
CTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-402)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.984

99.408

0.517
  comM Haemophilus influenzae Rd KW20

50.296

100

0.503
  comM Vibrio campbellii strain DS40M4

50.099

99.606

0.499
  comM Glaesserella parasuis strain SC1401

49.901

100

0.499
  comM Legionella pneumophila str. Paris

48.039

100

0.483
  comM Legionella pneumophila strain ERS1305867

48.039

100

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.376

99.606

0.422