Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PE051_RS22990 Genome accession   NZ_CP115980
Coordinates   4745017..4746537 (+) Length   506 a.a.
NCBI ID   WP_334753959.1    Uniprot ID   -
Organism   Enterobacter asburiae strain WUM-UW/843     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4740017..4751537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PE051_RS22965 (PE051_22925) ilvE 4741583..4742512 (-) 930 WP_023309654.1 branched-chain-amino-acid transaminase -
  PE051_RS22970 (PE051_22930) ilvM 4742531..4742794 (-) 264 WP_024907956.1 acetolactate synthase 2 small subunit -
  PE051_RS22975 (PE051_22935) ilvG 4742791..4744437 (-) 1647 WP_045889364.1 acetolactate synthase 2 catalytic subunit -
  PE051_RS22980 (PE051_22940) ilvX 4744440..4744490 (-) 51 WP_166792073.1 peptide IlvX -
  PE051_RS22985 (PE051_22945) ilvL 4744577..4744675 (-) 99 WP_001311244.1 ilv operon leader peptide -
  PE051_RS22990 (PE051_22950) comM 4745017..4746537 (+) 1521 WP_334753959.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PE051_RS22995 (PE051_22955) - 4746568..4746906 (-) 339 WP_023309658.1 DUF413 domain-containing protein -
  PE051_RS23000 (PE051_22960) hdfR 4747025..4747846 (+) 822 WP_023309659.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54965.93 Da        Isoelectric Point: 6.8204

>NTDB_id=774765 PE051_RS22990 WP_334753959.1 4745017..4746537(+) (comM) [Enterobacter asburiae strain WUM-UW/843]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDVIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAEVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNIEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=774765 PE051_RS22990 WP_334753959.1 4745017..4746537(+) (comM) [Enterobacter asburiae strain WUM-UW/843]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTATTTCCGTCGAGGTTCATTTGAGCAA
TGGGCTACCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTCGT
TGGCGAACTCGCGCTCACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCGGGAGCCCTGGAAGCCATACGAGCAGGGC
GGCAAATTATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGTCTCATCGCCGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGGCGGCATGAACTGTCCGAGCCGGAGGAGTGTGATGATGTTATAGCGGATGCACC
AGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCTGCAGGTGGACACAATCTTC
TGTTAATTGGGCCGCCAGGTACGGGTAAAACCATGCTGGCAAGCAGGTTGAGTGGGTTACTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGCGCCGCCATATATAGCCTTATCAGTTCGACATCGTTGCAAAAACAGTGGCGCCGCCGTCCTTTTCG
TTCGCCGCATCATAGCGCTTCACTGACGGCAATGGTCGGCGGCGGGGCGATTCCGGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTTGATGAACTACCTGAATTTGAGCGCCGTGTGCTGGATGCACTGAGGGAGCCCATTGAATCC
GGTGAGATACATATCTCACGCACGCGAGCCAAAATAAGCTATCCCGCACAGTTTCAGCTGGTCGCGGCGATGAATCCCAG
CCCGACGGGTCACTACCAGGGCAACCATAACCGCTGTACACCAGAGCAAACGTTGCGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATCCCCCTTCCCCCGCCGGGTCTCCTCAGGCAAACGGGCATAACGGGT
GAAAGCTCAGCGGAGGTACGCGAACGGGTGATTGCAGCCCAGACGCGGCAGTACGCTCGTCAAAACAGGCTGAATGCGCG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTTCTCTTAACATTGAGGATGCGGGATGGCTCGAGGAGACGTTGACGCGGT
TCGGGCTGTCCATACGTGCATGGCAGCGTTTGCTGAAGGTGGCCAGAACTATTGCTGACGTAGAGGGGTGCACTGACATT
GAGAGGAAACATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.153

100

0.585
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Vibrio campbellii strain DS40M4

58.449

99.407

0.581
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439