Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QUS01_RS16180 Genome accession   NZ_CP128590
Coordinates   3072649..3073278 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain VG35A2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3067649..3078278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUS01_RS16165 (QUS01_16165) helD 3067891..3069945 (-) 2055 WP_001315388.1 DNA helicase IV -
  QUS01_RS16170 (QUS01_16170) yccF 3070068..3070514 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QUS01_RS16175 (QUS01_16175) yccS 3070524..3072686 (+) 2163 WP_000875044.1 YccS family putative transporter -
  QUS01_RS16180 (QUS01_16180) sxy/tfoX 3072649..3073278 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QUS01_RS16185 (QUS01_16185) sulA 3073497..3074006 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QUS01_RS16190 (QUS01_16190) ompA 3074363..3075403 (+) 1041 WP_000750416.1 porin OmpA -
  QUS01_RS16195 (QUS01_16195) matP 3075479..3075931 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QUS01_RS16200 (QUS01_16200) ycbZ 3076117..3077877 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=774705 QUS01_RS16180 WP_000839153.1 3072649..3073278(-) (sxy/tfoX) [Escherichia coli strain VG35A2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=774705 QUS01_RS16180 WP_000839153.1 3072649..3073278(-) (sxy/tfoX) [Escherichia coli strain VG35A2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1