Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PG908_RS02145 Genome accession   NZ_CP115957
Coordinates   451902..452438 (+) Length   178 a.a.
NCBI ID   WP_011000383.1    Uniprot ID   Q8Y2B4
Organism   Ralstonia pseudosolanacearum strain PSS4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 452771..452872 451902..452438 flank 333


Gene organization within MGE regions


Location: 451902..452872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG908_RS02145 ssb 451902..452438 (+) 537 WP_011000383.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18697.54 Da        Isoelectric Point: 5.9786

>NTDB_id=774616 PG908_RS02145 WP_011000383.1 451902..452438(+) (ssb) [Ralstonia pseudosolanacearum strain PSS4]
MASVNKVIIVGNLGADPETRYMPSGDAVTNIRVATTDRYKDKASGEMREATEWHRIAFFGRLAEIAGEYLKKGSQVYVEG
RLKTRQWEKDGQKQYSTEIVAEQMQMLGSRQGMGGEGGGGGGGYSRGESSGGGGYGGGRAQGGGGMSRGEGGGGQGGGAR
RQQAPSNGFEDMDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=774616 PG908_RS02145 WP_011000383.1 451902..452438(+) (ssb) [Ralstonia pseudosolanacearum strain PSS4]
ATGGCGTCCGTCAACAAAGTCATCATCGTCGGCAATCTCGGCGCCGATCCCGAAACGCGTTACATGCCGAGCGGCGACGC
CGTCACCAATATCCGCGTGGCGACCACCGACCGCTACAAGGACAAGGCCAGCGGCGAAATGCGCGAGGCCACCGAGTGGC
ACCGCATCGCCTTCTTCGGCCGCCTGGCCGAAATCGCCGGCGAATACCTGAAGAAGGGTTCGCAGGTCTACGTCGAAGGC
CGCCTCAAGACCCGCCAGTGGGAGAAGGACGGCCAGAAACAGTACAGCACCGAAATCGTCGCCGAGCAGATGCAGATGCT
CGGCAGCCGCCAGGGCATGGGCGGCGAGGGCGGTGGCGGCGGTGGTGGCTACTCGCGCGGCGAATCGTCGGGCGGTGGCG
GTTACGGCGGTGGCCGTGCCCAGGGCGGCGGCGGTATGAGCCGCGGCGAAGGCGGTGGTGGTCAGGGCGGCGGCGCGCGC
CGTCAGCAGGCGCCTTCGAATGGGTTTGAGGATATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y2B4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.462

100

0.517
  ssb Vibrio cholerae strain A1552

47.027

100

0.489
  ssb Neisseria meningitidis MC58

43.575

100

0.438
  ssb Neisseria gonorrhoeae MS11

43.017

100

0.433
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.079

100

0.371