Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PG908_RS01720 Genome accession   NZ_CP115957
Coordinates   371385..372917 (-) Length   510 a.a.
NCBI ID   WP_011000302.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain PSS4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 366385..377917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG908_RS01695 - 367256..367807 (-) 552 WP_029240201.1 TlpA disulfide reductase family protein -
  PG908_RS01700 - 367911..368426 (-) 516 WP_011000298.1 O-acetyl-ADP-ribose deacetylase -
  PG908_RS01705 - 368526..369086 (+) 561 WP_028852545.1 hypothetical protein -
  PG908_RS01710 - 369228..369704 (-) 477 WP_043876531.1 hypothetical protein -
  PG908_RS01715 - 369751..371241 (-) 1491 WP_011000301.1 tyrosinase family protein -
  PG908_RS01720 comM 371385..372917 (-) 1533 WP_011000302.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PG908_RS01725 - 373127..373642 (-) 516 WP_011000303.1 hypothetical protein -
  PG908_RS01730 - 373922..374185 (-) 264 WP_011000304.1 accessory factor UbiK family protein -
  PG908_RS01735 - 374736..375542 (+) 807 WP_011000305.1 TorF family putative porin -
  PG908_RS01740 - 375590..375928 (+) 339 WP_011000306.1 P-II family nitrogen regulator -
  PG908_RS01745 - 375961..377511 (+) 1551 WP_020831101.1 ammonium transporter -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54558.21 Da        Isoelectric Point: 7.8372

>NTDB_id=774613 PG908_RS01720 WP_011000302.1 371385..372917(-) (comM) [Ralstonia pseudosolanacearum strain PSS4]
MSLAVLRSRALAGIDAPAVSVEVHLANGLPSFTIVGLPDTEVKESKDRVRAAIQNSRFEFPARRITVNLAPADLPKESGR
FDLPIALGILAASRQIPHTHLDAHEFAGELSLSGDLRPIRGALAMAYALSRQPGPPDGDAPRPRAFVLPTENAAEAALVS
GTRVLPAHTLSEVCDHLSTPDRKLASAVPAPIGASVHYPDLADVRGQPQARRALEVAAAGGHSMLMIGPPGTGKSMLAQR
FPGLLPDMSDDEALSAAAVMSLTTRGFDAQRWKVRPFRAPHHTASAVAMVGGGNTPRPGEISLAHQGVLFLDELPEFERR
VLEVLREPLETGHITISRAAHQTDFPASFQLIAAMNPCPCGYRGHPLRACRCTPDQVDRYQARLSGPLLDRIDVQIEVPT
PSQEELLDGPPGEPTAAVAARVAAAHARQRARQGKRNALLAGHEIDLHCTRTDAADSLLRQAMTRFSWSARAYARVLKLA
RTIADLAGDAAVDTAHVGEAIQYRRGVKAD

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=774613 PG908_RS01720 WP_011000302.1 371385..372917(-) (comM) [Ralstonia pseudosolanacearum strain PSS4]
ATGAGTCTTGCCGTCCTGCGTTCACGGGCGCTGGCCGGCATCGACGCGCCGGCGGTATCGGTGGAGGTGCACCTGGCCAA
CGGACTGCCCTCCTTCACCATCGTCGGTCTGCCGGACACGGAGGTGAAGGAAAGCAAGGACCGCGTGCGCGCGGCCATCC
AGAACAGCCGCTTCGAGTTTCCCGCGCGGCGCATCACCGTCAACCTGGCGCCGGCCGATCTGCCGAAAGAGTCGGGCCGC
TTCGACCTGCCGATCGCCCTGGGCATCCTCGCCGCCAGCCGGCAGATTCCGCACACGCACCTGGACGCGCACGAGTTTGC
GGGAGAGCTGTCGCTGTCGGGCGACCTGCGGCCGATCCGTGGCGCGCTGGCCATGGCATATGCGCTGTCGCGCCAGCCGG
GGCCGCCCGATGGCGACGCGCCGCGCCCTCGCGCCTTTGTCCTGCCCACCGAGAATGCCGCCGAGGCGGCGCTGGTCAGC
GGCACCCGGGTGCTGCCGGCGCACACGCTGAGCGAGGTCTGCGACCATCTGTCCACGCCCGACCGCAAGCTGGCGAGCGC
CGTGCCCGCCCCAATCGGCGCCAGCGTCCACTATCCCGACCTGGCCGACGTACGCGGCCAGCCGCAGGCGCGCCGCGCCC
TGGAAGTGGCAGCGGCCGGTGGCCACTCGATGCTGATGATCGGTCCGCCCGGCACCGGCAAGTCCATGCTGGCCCAGCGC
TTTCCCGGCTTGCTGCCCGACATGAGCGACGACGAGGCGCTCTCCGCCGCCGCGGTGATGAGCCTGACCACGCGCGGTTT
CGATGCGCAGCGCTGGAAGGTGCGTCCGTTCCGCGCGCCGCACCACACGGCGTCGGCGGTGGCGATGGTGGGAGGCGGCA
ACACGCCGCGGCCGGGCGAGATTTCGCTGGCGCATCAGGGCGTACTGTTCCTCGATGAATTGCCCGAATTCGAGCGCCGC
GTGCTGGAGGTCCTGCGGGAGCCGCTGGAAACCGGCCACATCACCATCTCCCGCGCGGCGCACCAGACGGATTTCCCCGC
CAGTTTCCAACTGATCGCGGCCATGAATCCGTGCCCGTGCGGCTATCGCGGGCATCCATTGCGCGCGTGCCGGTGCACGC
CGGACCAGGTGGATCGCTATCAGGCCCGCCTCTCCGGCCCGCTGCTCGATCGCATCGACGTGCAGATCGAGGTGCCGACG
CCATCGCAGGAGGAATTGCTCGATGGCCCGCCCGGCGAGCCGACCGCCGCCGTGGCCGCGCGCGTGGCGGCGGCGCATGC
ACGGCAACGGGCGCGCCAGGGCAAACGCAACGCACTGCTGGCCGGGCACGAGATCGATCTGCATTGCACGCGCACCGACG
CTGCCGACAGCCTGCTGCGCCAGGCGATGACGCGCTTCTCGTGGTCGGCCCGCGCCTATGCGCGCGTGCTCAAGCTCGCC
CGCACCATCGCCGACCTGGCGGGCGACGCGGCTGTCGATACGGCGCACGTTGGCGAAGCCATCCAATACCGGCGCGGCGT
GAAAGCAGACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-405)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)

Subunit ChlI of Mg-chelatase (ChlI)

(21-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.755

99.216

0.533
  comM Vibrio campbellii strain DS40M4

52.673

99.02

0.522
  comM Legionella pneumophila str. Paris

51.373

100

0.514
  comM Legionella pneumophila strain ERS1305867

51.373

100

0.514
  comM Glaesserella parasuis strain SC1401

51.373

100

0.514
  comM Haemophilus influenzae Rd KW20

49.903

100

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.578

100

0.427