Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PG915_RS14130 Genome accession   NZ_CP115920
Coordinates   3121959..3122507 (-) Length   182 a.a.
NCBI ID   WP_112459523.1    Uniprot ID   A0AAU8BH99
Organism   Vibrio chaetopteri strain CB1-14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3116959..3127507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG915_RS14115 (PG915_14095) - 3117897..3118049 (+) 153 WP_353497094.1 hypothetical protein -
  PG915_RS14120 (PG915_14100) bcsG 3118052..3119683 (+) 1632 WP_353497095.1 cellulose biosynthesis protein BcsG -
  PG915_RS14125 (PG915_14105) csrD 3119746..3121737 (-) 1992 WP_353497096.1 RNase E specificity factor CsrD -
  PG915_RS14130 (PG915_14110) ssb 3121959..3122507 (-) 549 WP_112459523.1 single-stranded DNA-binding protein Machinery gene
  PG915_RS14135 (PG915_14115) qstR 3122794..3123444 (+) 651 WP_353497097.1 LuxR C-terminal-related transcriptional regulator Regulator
  PG915_RS14140 (PG915_14120) galU 3123663..3124532 (+) 870 WP_353497098.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20170.42 Da        Isoelectric Point: 5.2358

>NTDB_id=774460 PG915_RS14130 WP_112459523.1 3121959..3122507(-) (ssb) [Vibrio chaetopteri strain CB1-14]
MASRGVNKVILVGNLGNDPEIRYMPNGSAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYTTEVVVQGFNGVMQMLGGRQGGGAPMQGGMNQGGMQQQAPQQQGWGQPQQPVQQPAQQPAQQ
KPAQQQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=774460 PG915_RS14130 WP_112459523.1 3121959..3122507(-) (ssb) [Vibrio chaetopteri strain CB1-14]
ATGGCAAGCCGTGGAGTAAACAAAGTCATTCTAGTGGGTAACTTAGGTAACGACCCAGAAATTCGTTACATGCCAAACGG
CAGTGCCGTGGCGAATATTACAATCGCGACCTCGGAATCGTGGCGTGACAAAGCGACTGGTGAACAGCGCGAGAAAACTG
AGTGGCACCGTGTTGCGTTATTCGGCAAGCTAGCGGAAGTGGCTGGTGAGTACCTAAGAAAGGGTTCTCAGGTATACATT
GAAGGTCAACTACAGACTCGTAAATGGCAAGATCAAAATGGTCAAGACCGCTACACAACTGAAGTTGTAGTACAAGGCTT
CAACGGTGTGATGCAAATGCTAGGTGGCCGTCAAGGTGGTGGTGCTCCTATGCAAGGTGGCATGAACCAAGGTGGCATGC
AGCAGCAAGCGCCGCAACAGCAAGGTTGGGGTCAGCCACAACAACCAGTTCAACAGCCAGCTCAACAACCCGCTCAACAA
AAGCCTGCTCAACAGCAGCCACAATACAATGAGCCACCAATGGACTTCGATGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.57

100

0.813
  ssb Glaesserella parasuis strain SC1401

57.068

100

0.599
  ssb Neisseria meningitidis MC58

45.263

100

0.473
  ssb Neisseria gonorrhoeae MS11

45.263

100

0.473