Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   PG915_RS14135 Genome accession   NZ_CP115920
Coordinates   3122794..3123444 (+) Length   216 a.a.
NCBI ID   WP_353497097.1    Uniprot ID   -
Organism   Vibrio chaetopteri strain CB1-14     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3117794..3128444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG915_RS14115 (PG915_14095) - 3117897..3118049 (+) 153 WP_353497094.1 hypothetical protein -
  PG915_RS14120 (PG915_14100) bcsG 3118052..3119683 (+) 1632 WP_353497095.1 cellulose biosynthesis protein BcsG -
  PG915_RS14125 (PG915_14105) csrD 3119746..3121737 (-) 1992 WP_353497096.1 RNase E specificity factor CsrD -
  PG915_RS14130 (PG915_14110) ssb 3121959..3122507 (-) 549 WP_112459523.1 single-stranded DNA-binding protein Machinery gene
  PG915_RS14135 (PG915_14115) qstR 3122794..3123444 (+) 651 WP_353497097.1 LuxR C-terminal-related transcriptional regulator Regulator
  PG915_RS14140 (PG915_14120) galU 3123663..3124532 (+) 870 WP_353497098.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PG915_RS14145 (PG915_14125) uvrA 3124686..3127514 (+) 2829 WP_353497099.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24735.29 Da        Isoelectric Point: 7.1595

>NTDB_id=774461 PG915_RS14135 WP_353497097.1 3122794..3123444(+) (qstR) [Vibrio chaetopteri strain CB1-14]
MRRNSYKRTIQHVSLGQDLEVTERIEALSNLCINPIETIEPQDLLNAATGPRNRILLFDYEESLDLFKQVLNLPLASKNF
ETILINVPHRLTTEEILKYGHLKGLFYSHEDGNKITFGFGEIINGKNWLPRDVASQLLHHYRYVVSANTCTTVVDLTSRE
IEILRCLQSGASNLEISGDLYITESTVKSHLYQIFRKLSVKNRLQAIAWANQHLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=774461 PG915_RS14135 WP_353497097.1 3122794..3123444(+) (qstR) [Vibrio chaetopteri strain CB1-14]
ATGAGAAGAAACAGTTACAAACGCACCATACAACACGTCAGCCTCGGTCAAGATCTCGAAGTTACCGAACGAATTGAGGC
GCTCTCCAATCTTTGCATTAATCCTATCGAAACCATTGAACCCCAAGATCTATTGAACGCAGCGACAGGACCTAGAAATC
GAATCTTACTGTTTGACTACGAAGAATCGCTAGATCTATTTAAGCAGGTATTGAACCTCCCCCTTGCCAGCAAAAACTTT
GAGACCATTTTGATCAATGTACCTCACCGCTTAACCACTGAAGAGATCCTCAAGTACGGCCATTTAAAAGGGCTGTTCTA
CAGCCATGAAGATGGCAATAAGATTACTTTTGGCTTCGGTGAGATAATTAATGGTAAAAACTGGCTGCCAAGAGATGTCG
CCAGTCAATTACTGCACCACTATCGATACGTGGTTTCTGCTAACACGTGCACGACCGTGGTCGACTTAACCTCTCGTGAA
ATTGAGATTCTGCGTTGCTTGCAGTCAGGTGCCAGTAACCTAGAGATATCTGGAGACCTCTACATTACCGAGTCAACGGT
CAAGTCACACTTGTATCAGATATTTCGCAAGCTATCGGTAAAAAATAGACTGCAGGCCATCGCCTGGGCCAATCAGCACC
TATTGTCTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

52.093

99.537

0.519
  qstR Vibrio campbellii strain DS40M4

50.926

100

0.509
  qstR Vibrio parahaemolyticus RIMD 2210633

49.074

100

0.491