Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PG915_RS00890 Genome accession   NZ_CP115920
Coordinates   188129..189652 (+) Length   507 a.a.
NCBI ID   WP_353497494.1    Uniprot ID   A0AAU8BJK3
Organism   Vibrio chaetopteri strain CB1-14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 183129..194652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG915_RS00875 (PG915_00875) - 184764..185705 (-) 942 WP_353497491.1 branched-chain amino acid transaminase -
  PG915_RS00880 (PG915_00880) ilvM 185721..186002 (-) 282 WP_353497492.1 acetolactate synthase 2 small subunit -
  PG915_RS00885 (PG915_00885) ilvG 186002..187648 (-) 1647 WP_353497493.1 acetolactate synthase 2 catalytic subunit -
  PG915_RS00890 (PG915_00890) comM 188129..189652 (+) 1524 WP_353497494.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PG915_RS00895 (PG915_00895) - 189653..190621 (-) 969 WP_353497495.1 DUF2860 family protein -
  PG915_RS00900 (PG915_00900) - 190764..191753 (-) 990 WP_353497496.1 DUF2860 family protein -
  PG915_RS00905 (PG915_00905) - 191953..192837 (+) 885 WP_353497497.1 acyltransferase -
  PG915_RS00910 (PG915_00910) - 192890..193489 (-) 600 WP_353497498.1 thiol:disulfide interchange protein DsbA/DsbL -
  PG915_RS00915 (PG915_00915) - 193544..194527 (-) 984 WP_353497499.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55119.35 Da        Isoelectric Point: 8.1726

>NTDB_id=774433 PG915_RS00890 WP_353497494.1 188129..189652(+) (comM) [Vibrio chaetopteri strain CB1-14]
MGLSIIYSRASVGVEAPLVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQLPHDKLLVHEFVGELALSGELRSVKGVLPAALAANKAQRCLLVPEDNGDQAALVGKDNHKSASSL
LDVCSYLMGQQTLSLVTSKPVVQVAKKGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSE
DEAMETASVASLTQQEINESNWKTRPFRAPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKALDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNHSRTNPQLILRYLSRLSGPLLDRFDMSIEIPSLPKGTLAEGGDR
GETTQTVKQRVLVARETMLLRSGKVNALLQSREIENYCRLEKADAEFLENALHRLGLSIRAYHRIIKVARTIADLANEPS
IQRAHIAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=774433 PG915_RS00890 WP_353497494.1 188129..189652(+) (comM) [Vibrio chaetopteri strain CB1-14]
ATGGGATTATCTATTATTTACAGCCGTGCCAGTGTTGGTGTGGAGGCACCTCTAGTGACAGTGGAAGTGCACATCAGCAA
TGGCATGCCAGGCTTTACGCTCGTCGGACTTCCCGAGACGACAGTCAAAGAATCTAAGGATAGAGTTCGTAGTGCGATCA
TCAATTCTCGGTTCGAATTTCCCGCCAAACGAATCACAGTCAATCTCGCCCCCGCCGATCTCCCCAAAGAAGGCGGCCGC
TTTGATTTGCCGATAGCGTTGGGAATACTGGCGGCCTCCGATCAACTGCCTCACGATAAACTTCTGGTGCATGAATTTGT
TGGAGAGTTGGCATTGTCAGGGGAACTTAGATCAGTGAAAGGCGTATTGCCTGCCGCACTTGCAGCCAATAAAGCGCAGC
GCTGCTTGTTAGTACCTGAAGATAATGGCGATCAAGCTGCCTTGGTTGGTAAAGATAACCACAAGTCAGCGTCCTCATTG
TTGGATGTGTGCAGTTACTTAATGGGGCAGCAGACTCTTTCATTGGTGACCAGCAAGCCCGTTGTTCAAGTCGCGAAAAA
GGGCCGAGACCTGCAAGATATTATTGGACAGCAGCAAGGAAAGAGGGCGCTGGAAATCGCGGCGGCCGGTAATCACAATT
TACTTTTTCTCGGTCCGCCTGGCACAGGGAAAACTATGTTGGCCTCTCGACTTTGTGATTTGTTACCTGAGATGAGCGAA
GATGAAGCCATGGAAACGGCCTCGGTGGCCTCACTCACTCAACAAGAAATTAATGAGAGCAATTGGAAAACCAGACCCTT
TCGCGCGCCCCATCATTCAAGCTCAATGGCTGCACTCGTGGGTGGCGGTTCTATTCCTAGACCGGGAGAAATCTCTCTGG
CGCACAACGGATTGCTGTTCTTAGATGAGATGCCGGAATTCGAGCGCAAAGCACTAGACTCACTGCGCGAGCCATTGGAG
TCTGGTGAGATCATTATTTCTCGCGCGCAAGGAAAAACCCGCTTTCCAGCTCGTTTTCAATTGGTTGGTGCGTTAAATCC
AAGCCCAACAGGTTATTACGAGGGCAATCACTCCAGAACCAACCCGCAGCTTATCCTGCGCTATTTGAGTCGTTTATCTG
GGCCGCTACTCGACCGATTTGATATGTCTATAGAGATCCCCTCACTGCCCAAAGGCACCTTAGCTGAAGGCGGAGATCGA
GGAGAAACGACGCAAACCGTGAAGCAGCGTGTGTTGGTTGCAAGAGAGACGATGTTATTGCGCAGCGGCAAAGTGAATGC
CTTGTTGCAAAGCCGCGAAATAGAGAATTACTGCCGCTTAGAAAAAGCCGATGCTGAGTTTTTAGAAAATGCCTTACATC
GACTTGGCTTGTCGATTCGTGCTTATCACCGCATCATTAAAGTCGCACGAACGATTGCCGACCTTGCCAATGAGCCCTCT
ATACAGCGAGCTCATATTGCAGAAGCGCTTGGTTATCGCGCCATGGATCGGCTACTCAAGCAGCTCACCGCGCAAGCGGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

85.207

100

0.852
  comM Vibrio campbellii strain DS40M4

84.024

100

0.84
  comM Haemophilus influenzae Rd KW20

66.864

100

0.669
  comM Glaesserella parasuis strain SC1401

64.66

100

0.657
  comM Legionella pneumophila str. Paris

48.893

98.028

0.479
  comM Legionella pneumophila strain ERS1305867

48.893

98.028

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.539

99.211

0.432