Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PGN40_RS21305 Genome accession   NZ_CP115914
Coordinates   4236811..4237302 (-) Length   163 a.a.
NCBI ID   WP_019394676.1    Uniprot ID   -
Organism   Priestia filamentosa strain AZC66     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4231811..4242302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGN40_RS21285 (PGN40_21285) rplI 4232904..4233350 (-) 447 WP_019394680.1 50S ribosomal protein L9 -
  PGN40_RS21290 (PGN40_21290) - 4233347..4235320 (-) 1974 WP_019394679.1 DHH family phosphoesterase -
  PGN40_RS21295 (PGN40_21295) - 4235410..4236345 (-) 936 WP_048896894.1 YybS family protein -
  PGN40_RS21300 (PGN40_21300) rpsR 4236513..4236755 (-) 243 WP_019394677.1 30S ribosomal protein S18 -
  PGN40_RS21305 (PGN40_21305) ssbA 4236811..4237302 (-) 492 WP_019394676.1 single-stranded DNA-binding protein Machinery gene
  PGN40_RS21310 (PGN40_21310) rpsF 4237336..4237623 (-) 288 WP_019394675.1 30S ribosomal protein S6 -
  PGN40_RS21315 (PGN40_21315) ychF 4237879..4238979 (-) 1101 WP_272541769.1 redox-regulated ATPase YchF -
  PGN40_RS21320 (PGN40_21320) - 4239100..4241103 (-) 2004 WP_040060456.1 molybdopterin-dependent oxidoreductase -
  PGN40_RS21325 (PGN40_21325) - 4241174..4241374 (-) 201 WP_040060458.1 DUF951 domain-containing protein -
  PGN40_RS21330 (PGN40_21330) - 4241394..4242269 (-) 876 WP_019394671.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18039.62 Da        Isoelectric Point: 4.6035

>NTDB_id=774405 PGN40_RS21305 WP_019394676.1 4236811..4237302(-) (ssbA) [Priestia filamentosa strain AZC66]
MINRVILVGRLTKDPELRYTPNGVAVATFSLAVNRTFTNQQGDREADFINCVVWRRQAENVANFLKKGSLAGVDGRIQTR
SYDNQEGRRVYVTEVVGDNVQFLEPKSGSGGGNSNNNFQSSPNQGSPFGQDQNRNNQGYTRVDDDPFSSNGDTIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=774405 PGN40_RS21305 WP_019394676.1 4236811..4237302(-) (ssbA) [Priestia filamentosa strain AZC66]
ATGATCAATCGCGTTATTCTTGTTGGCCGTTTAACGAAAGACCCTGAATTACGCTATACGCCAAATGGAGTCGCTGTAGC
AACTTTTAGTTTGGCAGTTAATCGCACATTTACAAATCAGCAAGGCGACCGTGAAGCTGACTTCATTAATTGCGTCGTTT
GGCGTCGTCAAGCTGAGAACGTAGCAAACTTCTTGAAGAAAGGAAGTTTAGCTGGTGTTGATGGCCGAATTCAAACTCGT
AGCTATGACAATCAAGAAGGCCGTCGTGTCTATGTCACTGAAGTGGTAGGAGACAACGTTCAATTTCTTGAGCCGAAGAG
CGGAAGCGGTGGCGGAAATTCTAATAACAATTTCCAAAGCTCTCCAAATCAAGGTTCTCCATTTGGACAAGATCAGAACC
GCAACAATCAAGGATATACACGTGTAGATGATGATCCGTTCTCAAGCAACGGAGATACAATTGACATTTCAGATGATGAT
CTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.052

100

0.712
  ssb Latilactobacillus sakei subsp. sakei 23K

60

100

0.626
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

65.031

0.411
  ssb Glaesserella parasuis strain SC1401

36.158

100

0.393
  ssb Vibrio cholerae strain A1552

33.714

100

0.362