Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PG878_RS02295 Genome accession   NZ_CP115873
Coordinates   514721..516274 (-) Length   517 a.a.
NCBI ID   WP_209030586.1    Uniprot ID   -
Organism   Xanthomonas hawaiiensis strain A6251     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 509721..521274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG878_RS02270 (PG878_02265) - 510681..511370 (+) 690 WP_209030582.1 ComF family protein -
  PG878_RS02275 (PG878_02270) - 511566..512072 (+) 507 WP_209030583.1 preprotein translocase subunit SecD -
  PG878_RS02280 (PG878_02275) ubiA 512243..513145 (-) 903 WP_209030584.1 4-hydroxybenzoate octaprenyltransferase -
  PG878_RS02290 (PG878_02285) - 513795..514640 (+) 846 WP_209030585.1 alpha/beta hydrolase -
  PG878_RS02295 (PG878_02290) comM 514721..516274 (-) 1554 WP_209030586.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PG878_RS02300 (PG878_02295) - 516288..516557 (-) 270 WP_209030587.1 accessory factor UbiK family protein -
  PG878_RS02305 (PG878_02300) - 516734..517072 (+) 339 WP_010341856.1 P-II family nitrogen regulator -
  PG878_RS02310 (PG878_02305) - 517381..518304 (+) 924 WP_311185984.1 transposase -
  PG878_RS02315 (PG878_02310) - 518368..519105 (-) 738 WP_209032647.1 hypothetical protein -
  PG878_RS02320 (PG878_02315) speE 519362..520213 (-) 852 WP_209032646.1 polyamine aminopropyltransferase -

Sequence

Protein


Download         Length: 517 a.a.        Molecular weight: 54817.53 Da        Isoelectric Point: 8.3374

>NTDB_id=774104 PG878_RS02295 WP_209030586.1 514721..516274(-) (comM) [Xanthomonas hawaiiensis strain A6251]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAALLCAQYEFPARRITVNLAPADLPKEGGR
FDLPIALGILAAAGQLDPQVLGQYEFLGELALTGELRPVDGVLPAALAAAEAGRTLIVPADNGAEAALAQHVQAFTARTL
LEVCGLLNGSKTLPAATAPPAVAAPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALESAAIASVSGRGVDPARWRQRPYRAPHHTASAVSLVGGGSHPRPGEISLAHHGVLFLDELPEWNRHALEVLREPLESG
QVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDPSGRCRCSEDAVRRYRARISGPLLDRIDLHVEVPRLPPQALRADAPP
GESSAAVRERVEQARQRQQARAGRPNGQLGHSETLRDCRLQPRDEALLEQAIERLRLSARSLHRILRVARTIADLDASDT
IATAHLTEAIAYRQLDRGEATANAVGPTPPGARRLAG

Nucleotide


Download         Length: 1554 bp        

>NTDB_id=774104 PG878_RS02295 WP_209030586.1 514721..516274(-) (comM) [Xanthomonas hawaiiensis strain A6251]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAAGTCCATCTCTCCGG
CGGCCTGCCGGCTACCCAGATCGTCGGCCTGCCCGAGGCGGCGGTACGCGAATCGCGCGACCGCGTCCGCGCCGCCTTGC
TCTGCGCGCAGTACGAATTCCCGGCGCGGCGGATCACCGTCAACCTGGCCCCGGCCGACCTGCCCAAGGAGGGCGGCCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTTGCCGCCGCCGGCCAGCTCGACCCGCAGGTGCTCGGCCAGTACGAATTCCT
CGGCGAGCTGGCGCTGACCGGCGAACTGCGCCCGGTCGACGGCGTCCTGCCGGCGGCGCTGGCCGCCGCCGAGGCCGGGC
GCACCCTGATCGTCCCGGCCGACAACGGCGCCGAGGCGGCACTGGCGCAACACGTGCAGGCCTTCACCGCGCGCACCCTG
CTGGAGGTCTGCGGCTTGCTCAACGGCAGCAAGACCCTGCCCGCGGCGACGGCGCCGCCGGCGGTCGCCGCCCCCTTTCC
CGACCTGAGCGACGTGCGCGGCCAGGCGCAGGCGCGCCGCGCCCTGGAGATCGCCGCGGCCGGGCATCACCATCTGTTGC
TGATTGGCAGCCCCGGCTGCGGCAAGACCCTGCTAGCCTCGCGCCTGCCCGGGATCCTGCCCGAGGCCAGCGAAGCCGAG
GCGCTGGAGAGCGCAGCCATCGCCTCGGTCAGCGGCCGCGGCGTGGATCCGGCGCGCTGGCGGCAACGCCCCTACCGCGC
ACCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGCGGCGGCAGCCATCCGCGTCCCGGCGAGATCTCGCTGGCACACC
ATGGCGTGCTGTTCCTGGACGAGCTGCCCGAGTGGAACCGGCATGCGCTGGAAGTGCTGCGCGAGCCGCTGGAGTCGGGC
CAGGTGACCGTGTCGCGTGCGGCGCGCAGCGCCGAGTTCCCCGCGCGCTTCCAGTTGGTGGCGGCGATGAATCCCTGCCC
CTGCGGCTGGGCCGGCGACCCCAGCGGCCGCTGCCGCTGCAGCGAGGACGCGGTGAGACGTTACCGCGCGCGCATCTCCG
GTCCGCTGCTAGACCGCATCGACCTGCACGTGGAAGTGCCGCGGCTGCCGCCACAGGCGCTACGCGCCGATGCGCCGCCC
GGCGAATCCAGCGCCGCCGTGCGCGAGCGCGTGGAACAGGCGCGGCAACGCCAGCAGGCACGTGCCGGCCGGCCCAACGG
CCAGCTCGGCCACAGCGAGACCCTGCGCGACTGCCGCCTGCAGCCGCGCGACGAGGCACTGCTGGAACAGGCCATCGAAC
GCCTGCGGCTGTCGGCGCGCTCGCTGCATCGGATCCTGCGTGTAGCCCGCACCATCGCCGACTTGGACGCCAGCGACACC
ATCGCCACTGCGCACCTGACCGAGGCCATCGCTTACCGGCAACTGGATCGTGGGGAGGCGACGGCGAACGCCGTGGGTCC
GACGCCACCTGGGGCACGCCGCCTGGCAGGGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.42

98.453

0.536
  comM Vibrio cholerae strain A1552

55.311

96.518

0.534
  comM Haemophilus influenzae Rd KW20

54.365

97.485

0.53
  comM Glaesserella parasuis strain SC1401

52.976

97.485

0.516
  comM Legionella pneumophila str. Paris

50.704

96.132

0.487
  comM Legionella pneumophila strain ERS1305867

50.704

96.132

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.972

98.453

0.453