Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PGN41_RS00985 Genome accession   NZ_CP115820
Coordinates   203277..204770 (-) Length   497 a.a.
NCBI ID   WP_271104464.1    Uniprot ID   -
Organism   Pseudomonas tohonis strain Q4-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 198277..209770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGN41_RS29825 - 199471..200193 (+) 723 WP_397469056.1 methyl-accepting chemotaxis protein -
  PGN41_RS00975 - 200254..201060 (-) 807 WP_271104462.1 TlpA disulfide reductase family protein -
  PGN41_RS00980 - 201186..203162 (-) 1977 WP_271104463.1 BCCT family transporter -
  PGN41_RS00985 comM 203277..204770 (-) 1494 WP_271104464.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PGN41_RS00990 - 204805..205068 (-) 264 WP_111261184.1 accessory factor UbiK family protein -
  PGN41_RS00995 glnK 205478..205816 (+) 339 WP_003457590.1 P-II family nitrogen regulator -
  PGN41_RS01000 - 205851..207170 (+) 1320 WP_111261183.1 ammonium transporter -
  PGN41_RS01005 - 207379..207804 (+) 426 WP_271104466.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PGN41_RS01010 sutA 207881..208204 (+) 324 WP_111261181.1 transcriptional regulator SutA -
  PGN41_RS01015 - 208264..208968 (-) 705 WP_213627642.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52642.44 Da        Isoelectric Point: 6.9902

>NTDB_id=773839 PGN41_RS00985 WP_271104464.1 203277..204770(-) (comM) [Pseudomonas tohonis strain Q4-3]
MSLALVHSRAQVGVEAPAVTVEAHLTNGLPSLALVGLPETAVKESKDRVRSAILTSGFEFPLRRITLNLAPADLPKDGGR
FDLAVALGILAASGQVPASSLETLECLGELALSGAVRPVQGVLPAALAARTAGRTLVVPRENAEEASLASGLRVIAIGHL
LELAAHLNGQAPLEPFVSAGLPDQAASYPDLIEVQGQVAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLQE
QEALEVAAIHSVASHAPLDAWPLRPFRQPHHSASGPALVGGGSKPRPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GEIVIARANDRVRFPARFQLVAAMNPCPCGYLGDSANRCRCTPEQIQRYRAKLSGPLLDRIDLHLTVAREATSLDDPLPG
GQDSASAAAEVARARQRQLDRQGCANAFLDLQGLRRHCPLPEADRRWLEGACERLGLSLRAAHRIIKVARTLADLEQAAD
IARPHLAEALQYRPDTA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=773839 PGN41_RS00985 WP_271104464.1 203277..204770(-) (comM) [Pseudomonas tohonis strain Q4-3]
ATGTCCCTGGCCCTCGTCCACAGCCGCGCCCAGGTGGGCGTGGAAGCGCCGGCCGTCACGGTCGAGGCGCACCTGACCAA
CGGCCTGCCCTCGCTGGCCCTGGTCGGCCTGCCGGAGACGGCGGTGAAGGAGAGCAAGGACCGCGTCCGCAGCGCCATCC
TCACCAGCGGCTTCGAATTCCCGCTGCGCCGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCCAAGGACGGAGGCCGC
TTCGACCTCGCCGTCGCGCTCGGCATCCTCGCCGCCAGCGGCCAGGTGCCGGCCTCCAGCCTGGAAACGCTCGAGTGCCT
GGGCGAGCTGGCCCTCTCCGGCGCCGTGCGCCCGGTCCAGGGCGTGCTGCCGGCCGCGCTCGCCGCCCGCACCGCCGGAC
GCACCCTGGTGGTGCCACGGGAGAACGCCGAGGAAGCCAGCCTCGCCAGTGGCCTGCGGGTGATCGCCATCGGCCACCTG
CTGGAGCTGGCCGCGCACCTGAACGGGCAGGCGCCCCTCGAACCCTTCGTTTCCGCCGGCCTGCCCGACCAGGCGGCCTC
CTACCCCGACCTGATCGAGGTGCAAGGCCAGGTGGCGGCCAAGCGCGCCCTGCTGGTGGCGGCGGCGGGGGCTCACAACC
TCCTGCTCTCCGGGCCGCCGGGCACCGGCAAGACGCTGCTCGCCAGCCGCCTGCCGGGCCTGCTGCCCCCCTTGCAGGAG
CAGGAGGCGCTGGAAGTCGCCGCCATCCACTCGGTGGCCAGCCATGCCCCGCTGGATGCCTGGCCCCTGCGCCCGTTCCG
CCAACCGCACCACAGCGCCTCCGGCCCCGCCCTGGTGGGGGGAGGCAGCAAGCCAAGGCCCGGTGAGATCACCCTCGCGC
ATCAGGGCGTGCTGTTCCTCGACGAGTTGCCCGAGTTCGATCGCAAGGTGCTCGAAGTGCTCAGGGAGCCCCTGGAAAGC
GGCGAGATCGTCATCGCTCGCGCCAACGACCGCGTGCGCTTCCCCGCGCGCTTCCAGCTGGTCGCCGCGATGAACCCCTG
CCCCTGCGGCTATCTGGGCGACAGCGCCAACCGCTGCCGCTGTACGCCCGAGCAGATCCAGCGCTACCGCGCCAAGCTCT
CCGGCCCGCTGCTCGATCGCATCGACCTGCACCTGACCGTGGCCCGCGAGGCCACGTCGCTGGACGACCCGCTTCCCGGT
GGCCAGGACAGCGCCAGCGCCGCCGCCGAGGTGGCCCGCGCCCGCCAGCGCCAGCTTGATCGCCAGGGCTGCGCCAACGC
CTTCCTCGATCTCCAGGGCCTGCGACGCCATTGCCCGCTGCCCGAGGCGGACCGCCGCTGGCTGGAGGGCGCCTGCGAGC
GCCTCGGCCTGTCGCTGCGGGCCGCACACCGCATCATCAAGGTCGCACGCACGCTCGCGGACCTGGAGCAGGCTGCGGAC
ATCGCCCGGCCACACCTGGCCGAGGCGTTGCAGTACCGCCCCGACACTGCGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.576

99.598

0.573
  comM Vibrio campbellii strain DS40M4

55.96

99.598

0.557
  comM Haemophilus influenzae Rd KW20

54

100

0.543
  comM Glaesserella parasuis strain SC1401

52.8

100

0.531
  comM Legionella pneumophila str. Paris

49.112

100

0.501
  comM Legionella pneumophila strain ERS1305867

49.112

100

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.123

100

0.467