Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PF050_RS21885 Genome accession   NZ_CP115712
Coordinates   4589330..4589854 (-) Length   174 a.a.
NCBI ID   WP_061498794.1    Uniprot ID   -
Organism   Kosakonia pseudosacchari strain RX.G5M8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4584330..4594854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF050_RS21870 (PF050_21870) - 4586759..4587454 (+) 696 WP_086873929.1 amino acid ABC transporter permease -
  PF050_RS21875 (PF050_21875) - 4587432..4588202 (+) 771 WP_271064659.1 amino acid ABC transporter ATP-binding protein -
  PF050_RS21880 (PF050_21880) - 4588225..4588998 (+) 774 WP_271064660.1 amino acid ABC transporter substrate-binding protein -
  PF050_RS21885 (PF050_21885) ssb 4589330..4589854 (-) 525 WP_061498794.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PF050_RS21890 (PF050_21890) uvrA 4590116..4592941 (+) 2826 WP_086873926.1 excinuclease ABC subunit UvrA -
  PF050_RS21895 (PF050_21895) - 4592942..4593295 (-) 354 WP_086873925.1 MmcQ/YjbR family DNA-binding protein -
  PF050_RS21900 (PF050_21900) - 4593530..4594285 (+) 756 WP_271064661.1 response regulator -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18707.71 Da        Isoelectric Point: 5.2456

>NTDB_id=773581 PF050_RS21885 WP_061498794.1 4589330..4589854(-) (ssb) [Kosakonia pseudosacchari strain RX.G5M8]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=773581 PF050_RS21885 WP_061498794.1 4589330..4589854(-) (ssb) [Kosakonia pseudosacchari strain RX.G5M8]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACCG
AATGGCACCGCGTGGTGCTGTTTGGCAAGCTGGCGGAAGTCGCTGGTGAATACCTGCGTAAAGGCTCTCAGGTTTACATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATATACCACTGAAGTCGTTGTTAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGTGGCGGCGCACCGGCGGGTGGCGGTCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCCGCACCGGCACCG
TCTAACGAACCGCCGATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.379