Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QR290_RS26295 Genome accession   NZ_CP128260
Coordinates   5845697..5846215 (-) Length   172 a.a.
NCBI ID   WP_007966163.1    Uniprot ID   A0A345RWR5
Organism   Pseudomonas fluorescens strain PH.SM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5840697..5851215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR290_RS26265 (QR290_26265) - 5841153..5841821 (+) 669 WP_007955624.1 YjfI family protein -
  QR290_RS26270 (QR290_26270) - 5841839..5842537 (+) 699 WP_289203916.1 PspA/IM30 family protein -
  QR290_RS26275 (QR290_26275) - 5842661..5843311 (+) 651 WP_115079377.1 DUF2491 family protein -
  QR290_RS26280 (QR290_26280) - 5843325..5843750 (+) 426 WP_115079378.1 DUF350 domain-containing protein -
  QR290_RS26285 (QR290_26285) - 5843768..5844460 (+) 693 WP_007955628.1 DUF1190 domain-containing protein -
  QR290_RS26290 (QR290_26290) - 5844463..5845620 (+) 1158 WP_289203917.1 glutathionylspermidine synthase family protein -
  QR290_RS26295 (QR290_26295) ssb 5845697..5846215 (-) 519 WP_007966163.1 single-stranded DNA-binding protein Machinery gene
  QR290_RS26300 (QR290_26300) - 5846225..5847622 (-) 1398 WP_007955631.1 MFS transporter -
  QR290_RS26305 (QR290_26305) uvrA 5847814..5850648 (+) 2835 WP_115079381.1 excinuclease ABC subunit UvrA Machinery gene
  QR290_RS26310 (QR290_26310) bfr 5850714..5851181 (-) 468 WP_085697676.1 bacterioferritin -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19125.28 Da        Isoelectric Point: 5.9314

>NTDB_id=773472 QR290_RS26295 WP_007966163.1 5845697..5846215(-) (ssb) [Pseudomonas fluorescens strain PH.SM]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRPAPAPQQAAPQPA
PDFDSFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=773472 QR290_RS26295 WP_007966163.1 5845697..5846215(-) (ssb) [Pseudomonas fluorescens strain PH.SM]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACTTGCGGCCAGGATCCCGAAGTACGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAGCAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGCGTATCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACGCGTGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCGCAACAGGGCGACCAACAAGGCGGTGGCAACAACTACCAGCAGCAGGCGCCACGCC
AACAGGCTCCGCGTCCGCAGCAGTCGGCACCTCAGCAGCGTCCGGCCCCGGCTCCACAGCAGGCCGCACCGCAACCGGCT
CCGGATTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345RWR5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.923

100

0.616
  ssb Glaesserella parasuis strain SC1401

49.451

100

0.523
  ssb Neisseria meningitidis MC58

47.514

100

0.5
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.5