Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   QR290_RS26305 Genome accession   NZ_CP128260
Coordinates   5847814..5850648 (+) Length   944 a.a.
NCBI ID   WP_115079381.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain PH.SM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5842814..5855648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR290_RS26280 (QR290_26280) - 5843325..5843750 (+) 426 WP_115079378.1 DUF350 domain-containing protein -
  QR290_RS26285 (QR290_26285) - 5843768..5844460 (+) 693 WP_007955628.1 DUF1190 domain-containing protein -
  QR290_RS26290 (QR290_26290) - 5844463..5845620 (+) 1158 WP_289203917.1 glutathionylspermidine synthase family protein -
  QR290_RS26295 (QR290_26295) ssb 5845697..5846215 (-) 519 WP_007966163.1 single-stranded DNA-binding protein Machinery gene
  QR290_RS26300 (QR290_26300) - 5846225..5847622 (-) 1398 WP_007955631.1 MFS transporter -
  QR290_RS26305 (QR290_26305) uvrA 5847814..5850648 (+) 2835 WP_115079381.1 excinuclease ABC subunit UvrA Machinery gene
  QR290_RS26310 (QR290_26310) bfr 5850714..5851181 (-) 468 WP_085697676.1 bacterioferritin -
  QR290_RS26315 (QR290_26315) - 5851331..5852785 (-) 1455 WP_115079382.1 catalase -
  QR290_RS26320 (QR290_26320) rplQ 5853024..5853410 (-) 387 WP_007955635.1 50S ribosomal protein L17 -
  QR290_RS26325 (QR290_26325) rpoA 5853453..5854454 (-) 1002 WP_003186012.1 DNA-directed RNA polymerase subunit alpha -
  QR290_RS26330 (QR290_26330) rpsD 5854477..5855097 (-) 621 WP_003176404.1 30S ribosomal protein S4 -
  QR290_RS26335 (QR290_26335) rpsK 5855116..5855505 (-) 390 WP_002555466.1 30S ribosomal protein S11 -

Sequence

Protein


Download         Length: 944 a.a.        Molecular weight: 104334.22 Da        Isoelectric Point: 6.9551

>NTDB_id=773473 QR290_RS26305 WP_115079381.1 5847814..5850648(+) (uvrA) [Pseudomonas fluorescens strain PH.SM]
MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPDVDTIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPDHDIPLEAQTVSQMVDLVLAQPEGSKLMLLAPVIRERKG
EHLSVFEELRAQGFVRARVNGRLCELDELPKLDKQKKHTIEVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDE
PGEEMIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDIKRLVNGELTLAEGAIRGWDRRNVYYFQML
GSLAAHYGFSLEQPFNELPADQQKYILHGSGSQNVDFKYLNDRGDIVKRSHPFEGIVPNLERRYRETESASVREELAKFL
STQSCPDCRGTRLRREARHVWVGEKTLPAVTNLPIGDACDYFGALKMTGRRGEIADKILKEIRERLQFLVNVGLDYLSLD
RSADTLSGGEAQRIRLASQIGAGLVGVLYILDEPSIGLHQRDNDRLLGTLKHLRDIGNTVIVVEHDEDAIRLADYVVDIG
PGAGVHGGQIVAEGTPDEVMAHPDSLTGKYLSGRVKIEVPAKRTPRNKKQVLSLKGARGNNLRNVDLEIPIGLLTCVTGV
SGSGKSTLINNTLFPLSATALNGATTLEAAAHDSIKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPES
RSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKYKGKSIHETLEMTIEEAREFFD
AVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDH
GNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIATGTPEEVAEMKQSHTGHYLKPLLIRDRA

Nucleotide


Download         Length: 2835 bp        

>NTDB_id=773473 QR290_RS26305 WP_115079381.1 5847814..5850648(+) (uvrA) [Pseudomonas fluorescens strain PH.SM]
TTGGACAAAATCCTGATTCGTGGGGCCCGTACCCACAACCTGAAGAACATCGACCTGACCCTGCCACGGGACAAACTGAT
CGTCATCACTGGCCTGTCCGGATCCGGCAAGTCGTCCCTGGCCTTCGACACGCTGTACGCCGAAGGTCAGCGCCGCTATG
TCGAATCCCTGTCGGCCTATGCCCGGCAGTTCCTGTCGATGATGGAAAAACCCGACGTCGACACTATCGAAGGCCTGTCG
CCGGCGATCTCCATCGAACAGAAGTCGACCTCGCACAACCCGCGCTCCACGGTCGGCACCATCACCGAAATCTACGACTA
CCTGCGTCTGCTTTATGCACGCGTCGGTACGCCGCGCTGCCCGGATCACGACATTCCGCTGGAAGCGCAGACCGTCAGCC
AGATGGTCGACCTGGTGCTGGCCCAGCCGGAAGGCAGCAAGCTGATGCTGCTGGCGCCGGTGATTCGCGAGCGCAAGGGC
GAGCATCTGTCGGTATTCGAAGAACTGCGTGCCCAGGGCTTCGTCCGGGCCCGGGTCAACGGCCGGCTCTGCGAGCTGGA
CGAACTGCCGAAACTGGATAAGCAGAAGAAGCACACGATTGAAGTCGTGGTCGATCGCTTCAAGGTACGCGCCGACCTGC
AGCAACGTCTGGCGGAATCCTTCGAGACCGCGCTGAAGTTGGCCGACGGCATCGCGCTGGTAGCGCCGATGGACGACGAG
CCGGGCGAAGAGATGATCTTCTCCGCGCGCTTCGCCTGCCCGATCTGCGGCCACGCGATCAGCGAGCTGGAACCCAAGCT
GTTTTCCTTCAACAACCCGGCTGGCGCCTGCCCGACCTGCGACGGTCTGGGGGTAAAGCAGTTCTTCGACATCAAGCGCC
TGGTCAACGGAGAACTGACCCTGGCCGAAGGCGCGATACGCGGCTGGGACAGGCGTAACGTCTATTACTTCCAGATGCTT
GGCTCACTGGCCGCGCATTACGGTTTCAGCCTGGAGCAGCCGTTCAACGAACTGCCGGCCGATCAGCAGAAGTACATCCT
GCACGGCAGCGGCTCGCAGAACGTCGATTTCAAATACCTCAACGACCGGGGCGACATCGTCAAGCGCTCGCACCCGTTCG
AAGGCATCGTGCCGAATCTCGAACGCCGCTACCGCGAAACCGAATCGGCAAGCGTGCGCGAAGAACTGGCGAAGTTCCTC
AGCACCCAGTCCTGTCCGGATTGCCGTGGCACTCGCCTGCGTCGCGAAGCGCGGCACGTGTGGGTCGGCGAGAAAACCCT
GCCGGCGGTGACCAACCTGCCAATCGGCGACGCCTGCGATTACTTCGGCGCGCTGAAGATGACCGGCCGACGTGGCGAAA
TCGCCGACAAGATTCTCAAGGAGATCCGCGAGCGTCTGCAGTTTCTGGTCAACGTCGGTCTCGACTATCTGTCGCTGGAT
CGCAGTGCCGATACCCTGTCCGGCGGTGAAGCGCAGCGGATTCGTCTGGCCAGCCAGATCGGCGCAGGCCTGGTGGGTGT
CCTGTACATTCTCGATGAACCGTCCATCGGTCTGCACCAGCGCGACAACGATCGCCTGCTCGGCACCCTCAAGCACCTGC
GCGACATCGGCAACACGGTGATTGTGGTCGAGCACGACGAAGATGCGATCCGTCTCGCCGACTACGTAGTGGATATCGGC
CCGGGCGCCGGCGTTCATGGCGGGCAGATCGTCGCCGAAGGCACGCCGGACGAAGTCATGGCGCACCCGGATTCGCTGAC
CGGTAAATACCTGTCGGGCCGAGTGAAGATCGAAGTGCCGGCCAAACGCACACCGCGCAACAAAAAGCAGGTGCTGTCAC
TCAAGGGCGCGCGGGGCAACAATCTGCGCAACGTCGACCTGGAGATCCCGATCGGCTTGCTGACTTGCGTGACCGGCGTT
TCCGGCTCCGGCAAATCGACGCTGATCAACAACACGCTGTTCCCGCTGAGCGCCACGGCCCTCAATGGCGCGACCACCCT
GGAAGCGGCAGCCCACGACAGCATCAAGGGCCTGGAGCATCTGGACAAGGTCGTCGACATCGACCAGAGCCCGATCGGCC
GTACGCCGCGCTCCAACCCGGCAACCTACACCGGGCTGTTCACACCGATCCGCGAACTGTTCGCCGGCGTGCCCGAGTCC
CGCTCCCGAGGTTACGGCCCGGGGCGTTTCTCGTTCAACGTCAAGGGTGGTCGTTGCGAAGCCTGCCAGGGCGACGGTCT
GATCAAGGTGGAAATGCACTTCCTGCCGGACATCTACGTTCCGTGTGACGTGTGCAAGAGCAAGCGTTACAACCGCGAAA
CCCTGGAGATCAAATACAAGGGCAAGAGCATCCACGAAACCCTTGAGATGACCATCGAGGAAGCGCGGGAGTTCTTCGAC
GCGGTGCCGGCGCTGGCGCGCAAGCTGCAGACGCTGATGGATGTGGGCCTGTCGTACATCAAGCTCGGCCAGTCGGCCAC
AACGCTGTCGGGTGGTGAAGCACAGCGGGTCAAGTTGTCCCGCGAGCTGTCCAAGCGCGATACCGGCAAGACTCTGTACA
TCCTCGACGAGCCGACCACGGGTCTGCACTTCGCGGATATCCAGCAATTGCTCGACGTACTGCATCGTCTGCGCGACCAC
GGCAATACCGTGGTGGTGATCGAGCACAACCTCGACGTGATCAAGACGGCCGACTGGCTGGTGGATCTCGGTCCCGAGGG
TGGTTCGAAAGGTGGGCAGATCATCGCCACCGGTACGCCGGAGGAAGTCGCCGAGATGAAACAGTCTCACACTGGCCATT
ACCTCAAGCCGCTGCTGATCCGCGATCGGGCCTGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-237)

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.766

99.576

0.575
  uvrA Streptococcus pneumoniae TIGR4

57.766

99.576

0.575
  uvrA Streptococcus pneumoniae D39

57.766

99.576

0.575