Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H7R41_RS16460 Genome accession   NZ_AP022238
Coordinates   3493173..3494660 (+) Length   495 a.a.
NCBI ID   WP_000010457.1    Uniprot ID   A0A5K6CVL4
Organism   Acinetobacter baumannii strain WP8-W18-ESBL-11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3488173..3499660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R41_RS16435 (WP8W18E11_32190) ribD 3489089..3490174 (-) 1086 WP_182925344.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  H7R41_RS16440 (WP8W18E11_32200) nrdR 3490190..3490648 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  H7R41_RS16445 (WP8W18E11_32210) - 3490807..3492204 (-) 1398 WP_000738520.1 ammonium transporter -
  H7R41_RS16450 (WP8W18E11_32220) glnK 3492262..3492600 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  H7R41_RS16455 (WP8W18E11_32230) - 3492880..3493107 (+) 228 WP_000894500.1 accessory factor UbiK family protein -
  H7R41_RS16460 (WP8W18E11_32240) comM 3493173..3494660 (+) 1488 WP_000010457.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H7R41_RS16465 (WP8W18E11_32250) - 3494675..3496108 (-) 1434 WP_016654433.1 PLP-dependent aminotransferase family protein -
  H7R41_RS16470 (WP8W18E11_32260) - 3496220..3496996 (+) 777 WP_000845026.1 aldolase -
  H7R41_RS16475 (WP8W18E11_32270) - 3497012..3497890 (+) 879 WP_000772980.1 dihydrodipicolinate synthase family protein -
  H7R41_RS16480 (WP8W18E11_32280) - 3497933..3498745 (-) 813 WP_000975212.1 TorF family putative porin -
  H7R41_RS18365 - 3498802..3498972 (-) 171 WP_000492276.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54439.34 Da        Isoelectric Point: 7.4186

>NTDB_id=77326 H7R41_RS16460 WP_000010457.1 3493173..3494660(+) (comM) [Acinetobacter baumannii strain WP8-W18-ESBL-11]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAHAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQGCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=77326 H7R41_RS16460 WP_000010457.1 3493173..3494660(+) (comM) [Acinetobacter baumannii strain WP8-W18-ESBL-11]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGCTTACCCTCTCTGACTATTGTAGGCTTAGCGGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTGGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCAGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCGGTTAATCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCACGCACAGCCAAGTGCCCATTCAAATGAAATGCCCTA
TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGCCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACATTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTCCCCGAGTTTGACAGAAAAGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCGGCTCGGCAAATTACTTATCCGGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCACCAGAAAGCATTAAACGCTATCAAAACCGCATATCGGGAC
CGTTACTCGACCGCATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACGCCTGCAGAA
GATTCTACAACTGTGCGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGGTTGTTTGAATCAGGCGCT
CTCACCAAAACAACTGGAACAACATGCCGTTCTCGATAGTACTTCACAACGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGCGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCTCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCACTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K6CVL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.411

100

0.515
  comM Glaesserella parasuis strain SC1401

50.501

100

0.509
  comM Haemophilus influenzae Rd KW20

49.699

100

0.501
  comM Legionella pneumophila strain ERS1305867

48.996

100

0.493
  comM Legionella pneumophila str. Paris

48.996

100

0.493
  comM Vibrio campbellii strain DS40M4

48.687

100

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.4

100

0.469

Multiple sequence alignment