Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   PF550_RS16935 Genome accession   NZ_CP115641
Coordinates   3530952..3531434 (-) Length   160 a.a.
NCBI ID   WP_001046416.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2022CK-00251     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3525952..3536434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF550_RS16900 (PF550_16900) - 3526059..3527093 (+) 1035 WP_024432274.1 lipase secretion chaperone -
  PF550_RS16905 (PF550_16905) - 3527208..3528149 (+) 942 WP_086223958.1 triacylglycerol lipase -
  PF550_RS16910 (PF550_16910) rplS 3528202..3528570 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  PF550_RS16915 (PF550_16915) trmD 3528778..3529518 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  PF550_RS16920 (PF550_16920) rimM 3529564..3530112 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  PF550_RS16925 (PF550_16925) rpsP 3530132..3530383 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  PF550_RS16930 (PF550_16930) pilE 3530530..3530955 (-) 426 WP_000788339.1 type IV pilin protein Machinery gene
  PF550_RS16935 (PF550_16935) pilY2 3530952..3531434 (-) 483 WP_001046416.1 type IV pilin protein Machinery gene
  PF550_RS16940 (PF550_16940) pilY1 3531447..3535301 (-) 3855 WP_024432273.1 PilC/PilY family type IV pilus protein Machinery gene
  PF550_RS16945 (PF550_16945) pilX 3535313..3536131 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17533.80 Da        Isoelectric Point: 8.4817

>NTDB_id=773151 PF550_RS16935 WP_001046416.1 3530952..3531434(-) (pilY2) [Acinetobacter baumannii strain 2022CK-00251]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCETNSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=773151 PF550_RS16935 WP_001046416.1 3530952..3531434(-) (pilY2) [Acinetobacter baumannii strain 2022CK-00251]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAACGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

95

100

0.95
  comE Acinetobacter baylyi ADP1

41.279

100

0.444