Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   PF550_RS16945 Genome accession   NZ_CP115641
Coordinates   3535313..3536131 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 2022CK-00251     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3530313..3541131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF550_RS16930 (PF550_16930) pilE 3530530..3530955 (-) 426 WP_000788339.1 type IV pilin protein Machinery gene
  PF550_RS16935 (PF550_16935) pilY2 3530952..3531434 (-) 483 WP_001046416.1 type IV pilin protein Machinery gene
  PF550_RS16940 (PF550_16940) pilY1 3531447..3535301 (-) 3855 WP_024432273.1 PilC/PilY family type IV pilus protein Machinery gene
  PF550_RS16945 (PF550_16945) pilX 3535313..3536131 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  PF550_RS16950 (PF550_16950) pilW 3536128..3537129 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  PF550_RS16955 (PF550_16955) pilV 3537130..3537690 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  PF550_RS16960 (PF550_16960) fimU 3537684..3538157 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  PF550_RS16965 (PF550_16965) ispH 3538327..3539277 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PF550_RS16970 (PF550_16970) gmk 3539400..3540029 (+) 630 WP_000015937.1 guanylate kinase -
  PF550_RS16975 (PF550_16975) rpoZ 3540102..3540380 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  PF550_RS16980 (PF550_16980) - 3540419..3540548 (+) 130 Protein_3309 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=773153 PF550_RS16945 WP_000149374.1 3535313..3536131(-) (pilX) [Acinetobacter baumannii strain 2022CK-00251]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=773153 PF550_RS16945 WP_000149374.1 3535313..3536131(-) (pilX) [Acinetobacter baumannii strain 2022CK-00251]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993