Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   H7R41_RS02310 Genome accession   NZ_AP022238
Coordinates   479112..479996 (+) Length   294 a.a.
NCBI ID   WP_002061271.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain WP8-W18-ESBL-11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 474112..484996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R41_RS02285 (WP8W18E11_04400) - 474510..475757 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  H7R41_RS02290 (WP8W18E11_04410) wrbA 476045..476638 (+) 594 WP_001183347.1 NAD(P)H:quinone oxidoreductase -
  H7R41_RS02295 (WP8W18E11_04420) - 476691..477266 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  H7R41_RS02300 (WP8W18E11_04430) - 477339..478052 (-) 714 WP_000201548.1 DUF3108 domain-containing protein -
  H7R41_RS02305 (WP8W18E11_04440) - 478210..478881 (-) 672 WP_001193958.1 hypothetical protein -
  H7R41_RS02310 (WP8W18E11_04450) tonB2 479112..479996 (+) 885 WP_002061271.1 energy transducer TonB Machinery gene
  H7R41_RS02315 (WP8W18E11_04460) ybeY 480086..480562 (-) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  H7R41_RS02320 (WP8W18E11_04470) - 480572..481660 (-) 1089 WP_000122983.1 PhoH family protein -
  H7R41_RS02325 (WP8W18E11_04480) miaB 481698..483149 (-) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33579.46 Da        Isoelectric Point: 8.3627

>NTDB_id=77300 H7R41_RS02310 WP_002061271.1 479112..479996(+) (tonB2) [Acinetobacter baumannii strain WP8-W18-ESBL-11]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHLMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=77300 H7R41_RS02310 WP_002061271.1 479112..479996(+) (tonB2) [Acinetobacter baumannii strain WP8-W18-ESBL-11]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTTTTAGCCCAAGCTGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCTGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCGGAACTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.66

100

0.997

Multiple sequence alignment