Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H7R41_RS01965 Genome accession   NZ_AP022238
Coordinates   421336..421971 (-) Length   211 a.a.
NCBI ID   WP_002061281.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain WP8-W18-ESBL-11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 416336..426971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R41_RS01930 (WP8W18E11_03720) mlaE 416673..417449 (+) 777 WP_002061269.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  H7R41_RS01935 (WP8W18E11_03730) - 417449..418129 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  H7R41_RS01940 (WP8W18E11_03740) - 418156..418797 (+) 642 WP_002061251.1 phospholipid-binding protein MlaC -
  H7R41_RS01945 (WP8W18E11_03750) - 418809..419096 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  H7R41_RS01950 (WP8W18E11_03760) - 419165..420178 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  H7R41_RS01955 (WP8W18E11_03770) - 420336..420917 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  H7R41_RS01960 (WP8W18E11_03780) - 420932..421333 (+) 402 WP_182925375.1 NUDIX domain-containing protein -
  H7R41_RS01965 (WP8W18E11_03790) comF 421336..421971 (-) 636 WP_002061281.1 ComF family protein Machinery gene
  H7R41_RS01970 (WP8W18E11_03800) recG 421964..424009 (-) 2046 WP_000204960.1 ATP-dependent DNA helicase RecG -
  H7R41_RS01975 (WP8W18E11_03810) - 424030..424845 (+) 816 WP_182925376.1 NAD-dependent epimerase/dehydratase family protein -
  H7R41_RS01980 (WP8W18E11_03820) adeT2 424925..425911 (+) 987 WP_002061272.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24646.77 Da        Isoelectric Point: 9.5613

>NTDB_id=77298 H7R41_RS01965 WP_002061281.1 421336..421971(-) (comF) [Acinetobacter baumannii strain WP8-W18-ESBL-11]
MFKFLNPQYLFHLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLECTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=77298 H7R41_RS01965 WP_002061281.1 421336..421971(-) (comF) [Acinetobacter baumannii strain WP8-W18-ESBL-11]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGCCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCCAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGAGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.052

100

0.991
  comF Acinetobacter baumannii D1279779

98.104

100

0.981

Multiple sequence alignment