Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   QRS93_RS09290 Genome accession   NZ_CP127842
Coordinates   1896447..1897187 (-) Length   246 a.a.
NCBI ID   WP_003061418.1    Uniprot ID   Q8KQN2
Organism   Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1891447..1902187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRS93_RS09265 (QRS93_09265) - 1892345..1893049 (-) 705 WP_003056091.1 N-acetylmannosamine-6-phosphate 2-epimerase -
  QRS93_RS09270 (QRS93_09270) rpmH 1893380..1893514 (-) 135 WP_002885866.1 50S ribosomal protein L34 -
  QRS93_RS09275 (QRS93_09275) jag 1893827..1894741 (-) 915 WP_015017424.1 RNA-binding cell elongation regulator Jag/EloR -
  QRS93_RS09280 (QRS93_09280) - 1894753..1895580 (-) 828 WP_015017425.1 YidC/Oxa1 family membrane protein insertase -
  QRS93_RS09285 (QRS93_09285) rnpA 1895546..1895905 (-) 360 WP_003056083.1 ribonuclease P protein component -
  QRS93_RS09290 (QRS93_09290) comE/blpR 1896447..1897187 (-) 741 WP_003061418.1 LytTR family DNA-binding domain-containing protein Regulator
  QRS93_RS09295 (QRS93_09295) - 1897191..1898474 (-) 1284 WP_015017426.1 sensor histidine kinase -
  QRS93_RS09300 (QRS93_09300) - 1898475..1899818 (-) 1344 WP_015017427.1 GHKL domain-containing protein -
  QRS93_RS09305 (QRS93_09305) gltX 1900433..1901881 (-) 1449 WP_003053372.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 28977.28 Da        Isoelectric Point: 4.8645

>NTDB_id=772968 QRS93_RS09290 WP_003061418.1 1896447..1897187(-) (comE/blpR) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37]
MMNIFILEDDFIQQTRIESVVADILEEAKIPCNQLEVFANPHKLFESIQERGDHQLYFLDIEIGDEDRRGLELAADIRQK
DPNAVIVFVTTHSEFAPISFKYKVSALDFIDKAVDKQQFRDQIEECIRYTYEMMSSRESEDMFLFETPQTRLKLPYKDIL
YFATATTPHKVCLWTQTERLEFYGNLSEIQAVAPKLFLCHRSYLVNLDKVVRIDKSKQLLYFDNGDSCMVSRLKMKCLFE
KWEALH

Nucleotide


Download         Length: 741 bp        

>NTDB_id=772968 QRS93_RS09290 WP_003061418.1 1896447..1897187(-) (comE/blpR) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37]
ATGATGAATATTTTTATTCTTGAAGATGATTTTATCCAACAGACACGTATTGAATCTGTAGTGGCAGACATCTTGGAAGA
AGCTAAAATCCCTTGTAATCAGCTAGAAGTGTTTGCCAATCCTCATAAATTATTTGAAAGCATTCAAGAAAGAGGCGATC
ACCAGCTATATTTTTTAGACATTGAGATTGGTGATGAGGATCGCCGAGGGCTTGAATTGGCAGCAGATATTCGACAAAAA
GACCCCAATGCGGTCATTGTGTTTGTTACCACACATTCTGAATTTGCTCCAATTTCTTTTAAATACAAAGTGTCTGCCTT
AGATTTTATTGACAAAGCAGTTGATAAACAACAATTTAGGGATCAGATTGAAGAATGTATCCGCTATACCTATGAGATGA
TGTCTAGCCGAGAATCAGAGGACATGTTTCTATTTGAGACTCCTCAGACAAGATTGAAACTACCTTACAAAGATATCCTT
TATTTTGCCACTGCTACGACACCCCACAAGGTGTGTTTGTGGACTCAGACGGAGAGACTGGAGTTTTATGGTAATTTATC
TGAGATACAAGCTGTGGCTCCAAAGCTTTTCTTATGCCATAGATCTTACTTGGTTAATCTAGATAAGGTTGTGCGTATTG
ATAAATCCAAACAGCTCCTCTATTTCGATAATGGGGATTCCTGTATGGTCTCACGCTTAAAAATGAAATGCCTTTTTGAA
AAATGGGAAGCCTTACATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-123)

LytTr DNA-binding domain (LytTR)

(152-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8KQN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

47.699

97.154

0.463
  comE/comE1 Streptococcus equinus JB1

42.437

96.748

0.411
  comE/comE2 Streptococcus equinus JB1

40.408

99.593

0.402
  comE/comE2 Streptococcus gordonii strain NCTC7865

39.113

100

0.394
  comE/comE1 Streptococcus gordonii str. Challis substr. CH1

39.113

100

0.394