Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H7K64_RS25370 Genome accession   NZ_AP022227
Coordinates   5393993..5395480 (+) Length   495 a.a.
NCBI ID   WP_182816762.1    Uniprot ID   A0A6S5TH18
Organism   Pseudomonas putida strain WP8-W18-CRE-01     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5388993..5400480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7K64_RS25345 (WP8W18C01_50140) - 5389884..5390579 (+) 696 WP_043213427.1 HAD family hydrolase -
  H7K64_RS25350 (WP8W18C01_50150) sutA 5390665..5390991 (-) 327 WP_043213429.1 transcriptional regulator SutA -
  H7K64_RS25355 (WP8W18C01_50160) - 5391449..5392780 (-) 1332 WP_043213430.1 ammonium transporter -
  H7K64_RS25360 (WP8W18C01_50170) glnK 5392823..5393161 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  H7K64_RS25365 (WP8W18C01_50180) - 5393549..5393812 (+) 264 WP_043213432.1 accessory factor UbiK family protein -
  H7K64_RS25370 (WP8W18C01_50190) comM 5393993..5395480 (+) 1488 WP_182816762.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H7K64_RS25375 (WP8W18C01_50200) - 5395645..5397432 (+) 1788 WP_182816764.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  H7K64_RS25380 (WP8W18C01_50210) - 5397585..5398496 (+) 912 WP_043213439.1 LysR substrate-binding domain-containing protein -
  H7K64_RS25385 (WP8W18C01_50220) - 5398592..5400433 (-) 1842 WP_167358081.1 amidohydrolase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 53013.87 Da        Isoelectric Point: 7.4919

>NTDB_id=77280 H7K64_RS25370 WP_182816762.1 5393993..5395480(+) (comM) [Pseudomonas putida strain WP8-W18-CRE-01]
MSLALVHSRAQVGVLAPAVSVETHLANGLPTLTLVGLPEATVKESKDRVRSAIVNSGLDYPARRITQNLAPADLPKDGGR
YDLAIALGILAANGQVPVAPLSEIECIGELALSGGLRPVQGVLPAALAAREAGRALVVPRENAEEASLANGLVVYAVGHL
LELVAHLNGQSPLSPFAANGLLLRERPYPDLSEVQGQTAAKRALLVAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHKPLDCWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVVARAKDRIRFPACFQLVAAMNPCPCGYLGDPTGRCRCSTEQIQRYRNKLSGPLLDRIDLHQTVARESTVLTHQPCG
ESSASVARLVAEARELQQRRQGCANAFLDLNGLRRHCALEAVDQAWLENACERLTLSLRAAHRLLKVARTLADLEQRECI
GRAHLAEALQYRPST

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=77280 H7K64_RS25370 WP_182816762.1 5393993..5395480(+) (comM) [Pseudomonas putida strain WP8-W18-CRE-01]
ATGTCCCTCGCCCTCGTCCACAGCCGCGCCCAGGTCGGCGTGCTGGCGCCTGCTGTCAGTGTCGAAACCCATCTGGCCAA
CGGCCTGCCCACCCTGACCCTGGTCGGTCTGCCCGAAGCCACGGTCAAGGAGAGCAAGGACCGCGTGCGCAGCGCCATCG
TCAACTCCGGCCTGGACTACCCCGCCCGACGCATCACCCAGAACCTCGCCCCGGCCGATCTGCCCAAGGACGGCGGGCGT
TACGATCTGGCCATCGCCTTGGGCATCCTGGCCGCCAATGGCCAGGTTCCGGTGGCGCCCCTGAGCGAAATCGAGTGCAT
CGGCGAGCTGGCGCTGTCGGGTGGATTGCGCCCAGTGCAAGGCGTGCTGCCTGCGGCACTGGCCGCGCGAGAGGCTGGGC
GAGCCCTGGTGGTACCCAGGGAGAACGCCGAGGAAGCGAGCCTGGCGAATGGCTTGGTGGTCTACGCAGTGGGCCATCTG
CTCGAGCTGGTGGCCCACCTCAACGGCCAGTCGCCCCTATCACCCTTTGCAGCCAACGGCCTGCTGCTGCGGGAGCGGCC
CTACCCGGACCTCAGCGAGGTCCAGGGCCAGACTGCCGCCAAGCGTGCGCTGCTGGTGGCTGCGGCCGGTGCACACAATC
TGCTTTTCACCGGACCGCCCGGCACGGGCAAGACCCTACTCGCCAGCCGCCTGCCCGGGTTGCTCCCTCCGCTGGATGAG
CACGAGGCTCTGGAAGTGGCGGCAATCCAATCGGTCAGCGGTCATAAGCCGCTGGACTGCTGGCCTCAGCGCCCCTTCCG
TCATCCTCATCACTCGGCGTCAGGCCCGGCCCTGGTGGGCGGTGGCAGTCGACCTCAACCGGGCGAGATCACCCTGGCGC
ATCATGGCGTGTTGTTTCTGGACGAACTGCCGGAGTTCGAGCGACGCGTGCTCGAAGTGCTCCGCGAGCCGCTGGAGTCA
GGGGAAATCGTGGTGGCCCGTGCCAAGGATCGCATACGCTTTCCTGCATGCTTTCAGCTGGTAGCGGCCATGAACCCCTG
CCCTTGCGGTTACCTGGGTGATCCCACCGGGCGTTGCCGGTGCAGCACCGAGCAAATCCAGCGTTATCGCAACAAGCTGT
CCGGCCCGCTGCTCGACCGGATCGATCTGCACCAGACCGTGGCCAGGGAAAGCACCGTACTGACCCACCAGCCCTGCGGC
GAGTCCAGCGCCAGCGTCGCCCGCCTGGTGGCCGAGGCACGTGAGCTACAGCAGCGGCGCCAGGGCTGCGCCAATGCCTT
TCTCGACCTCAACGGCCTGCGTCGCCACTGTGCGCTGGAAGCGGTCGACCAGGCCTGGTTGGAAAATGCATGCGAGCGCC
TGACTTTGTCCCTGCGGGCGGCCCATCGCCTGCTCAAGGTAGCCCGTACCTTGGCAGACCTTGAACAGAGAGAATGCATT
GGGCGTGCGCACCTGGCCGAAGCGCTCCAGTATCGACCAAGCACCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6S5TH18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.491

100

0.552
  comM Glaesserella parasuis strain SC1401

53.465

100

0.545
  comM Vibrio campbellii strain DS40M4

54.343

100

0.543
  comM Vibrio cholerae strain A1552

54.343

100

0.543
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

48.207

100

0.489
  comM Legionella pneumophila str. Paris

48.79

100

0.489
  comM Legionella pneumophila strain ERS1305867

48.79

100

0.489

Multiple sequence alignment