Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IB212_RS22335 Genome accession   NZ_CP115601
Coordinates   4662880..4664400 (+) Length   506 a.a.
NCBI ID   WP_041911811.1    Uniprot ID   A0AAU7NAF9
Organism   Enterobacter sp. E12     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4657880..4669400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IB212_RS22310 (IB212_22260) ilvE 4659447..4660376 (-) 930 WP_003860182.1 branched-chain-amino-acid transaminase -
  IB212_RS22315 (IB212_22265) ilvM 4660395..4660658 (-) 264 WP_041911813.1 acetolactate synthase 2 small subunit -
  IB212_RS22320 (IB212_22270) ilvG 4660655..4662301 (-) 1647 WP_041911812.1 acetolactate synthase 2 catalytic subunit -
  IB212_RS22325 (IB212_22275) ilvX 4662304..4662354 (-) 51 WP_166792073.1 peptide IlvX -
  IB212_RS22330 (IB212_22280) ilvL 4662441..4662539 (-) 99 WP_001311244.1 ilv operon leader peptide -
  IB212_RS22335 (IB212_22285) comM 4662880..4664400 (+) 1521 WP_041911811.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IB212_RS22340 (IB212_22290) - 4664428..4664766 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  IB212_RS22345 (IB212_22295) hdfR 4664885..4665706 (+) 822 WP_028014823.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54966.98 Da        Isoelectric Point: 7.3597

>NTDB_id=772683 IB212_RS22335 WP_041911811.1 4662880..4664400(+) (comM) [Enterobacter sp. E12]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIVVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELSEPEECEEAIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLSNH
EALESAAIYSLIGSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTDRLG
ESSAHVRERVIAAQARQYARQNRLNARLDNAGIRQFCSLNVEDAAWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ARKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=772683 IB212_RS22335 WP_041911811.1 4662880..4664400(+) (comM) [Enterobacter sp. E12]
ATGTCACTGTCAGTTGTTTATACGCGAGCGGCTCTCGGGGTAAAGGCTCCGCTTATTTCCGTAGAGGTTCATTTGAGTAA
TGGGCTGCCCGGACTCACGCTTGTCGGGTTACCTGAAACCACGGTTAAAGAGGCCAGGGACCGCGTTCGTAGCGCAATAA
TAAACAGCGGTTATACCTTCCCCGCAAAGAAGATCACCATCAACCTTGCTCCCGCCGACCTGCCCAAAGAGGGTGGGCGA
TACGATTTACCTATCGCAATTGCGCTTCTCGCGGCTTCTGAGCAGCTTAATACGACCAGGCTAGGCTCGTATGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCACTGAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATACGTGCAGGGC
GGCAAATCGTTGTGGCCAATGAAAACGCATCAGAAGTGAGTCTTATTGCAGAAAAGGGATGTCTCGTCGCCGGGCATCTT
CAGGAAGTGTGCGCCTGGCTGGAAGGCCGCCATGAACTGTCCGAGCCGGAAGAGTGCGAAGAGGCTATAGCGGATGCGCC
AGAAGACCTCAGCGAGATCATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCAGCGGGTGGGCACAATCTCC
TGCTGATTGGCCCGCCGGGTACGGGCAAAACCATGCTGGCGAGCAGGCTAAGCGGGCTGCTCCCGCCGCTTAGTAACCAT
GAAGCGCTGGAAAGCGCCGCCATCTATAGCCTGATCGGTTCGACGTCGTTGCACAAACAGTGGCGTCGACGTCCCTTTCG
TTCCCCGCATCATAGCGCGTCACTGACGGCAATGGTCGGTGGTGGGTCTATTCCGGGGCCGGGTGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTCGATGAGCTGCCTGAGTTTGAGCGCCGCGTGCTGGATGCGCTGAGGGAGCCCATTGAATCC
GGTGAGATACATATTTCACGCACGCGAGCCAAAATAAGCTATCCCGCCCGTTTTCAGCTCGTGGCGGCGATGAACCCCAG
TCCGACGGGGCATTATCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGCTGCGCTATCTGGGAAAGCTGTCTGGCC
CGTTTCTCGACCGTTTCGATTTATCACTGGAAATCCCCCTTCCGCCGCCGGGCCTGCTCAGGCAGACGGATAGACTGGGT
GAAAGCTCCGCGCATGTTCGCGAGCGGGTTATCGCGGCACAGGCGAGACAGTATGCCCGTCAAAACAGGCTGAATGCACG
ACTGGATAATGCAGGGATCCGACAGTTTTGTTCTCTTAACGTTGAAGATGCGGCTTGGCTGGAGGAGACGTTGACGCGCT
TTGGGCTTTCCATACGTGCGTGGCAGCGCTTGTTAAAAGTAGCCAGAACCATTGCGGACGTGGAGGGCTGTACTGATATT
GCGAGGAAACACTTGCAGGAAGCGCTGAGCTATCGGGCGATCGATCGTTTGCTTTTGCATCTGCAAAAGTTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

58.929

99.605

0.587
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Vibrio cholerae strain A1552

58.648

99.407

0.583
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443