Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   QRX37_RS18685 Genome accession   NZ_CP127324
Coordinates   3810222..3811430 (-) Length   402 a.a.
NCBI ID   WP_252492062.1    Uniprot ID   -
Organism   Escherichia coli strain 980-2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3805222..3816430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRX37_RS18665 (QRX37_18640) dam 3805834..3806670 (-) 837 WP_000742141.1 adenine-specific DNA-methyltransferase -
  QRX37_RS18670 (QRX37_18645) damX 3806777..3808063 (-) 1287 WP_000343177.1 cell division protein DamX -
  QRX37_RS18675 (QRX37_18650) aroB 3808155..3809243 (-) 1089 WP_000439850.1 3-dehydroquinate synthase -
  QRX37_RS18680 (QRX37_18655) aroK 3809300..3809821 (-) 522 WP_000818618.1 shikimate kinase AroK -
  QRX37_RS18685 (QRX37_18660) pilQ 3810222..3811430 (-) 1209 WP_252492062.1 DNA uptake porin HofQ Machinery gene
  QRX37_RS18690 (QRX37_18665) hofP 3811336..3811776 (-) 441 WP_252492061.1 DNA utilization protein HofP -
  QRX37_RS18695 (QRX37_18670) hofO 3811766..3812206 (-) 441 WP_075861588.1 DNA utilization protein HofO -
  QRX37_RS18700 (QRX37_18675) hofN 3812190..3812729 (-) 540 WP_001069327.1 DNA utilization protein HofN -
  QRX37_RS18705 (QRX37_18680) hofM 3812729..3813508 (-) 780 WP_000874542.1 DNA utilization protein HofM -
  QRX37_RS18710 (QRX37_18685) mrcA 3813628..3816180 (+) 2553 WP_075861589.1 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43494.67 Da        Isoelectric Point: 5.9466

>NTDB_id=772331 QRX37_RS18685 WP_252492062.1 3810222..3811430(-) (pilQ) [Escherichia coli strain 980-2]
MLIPGVQAAKPQKVTLMVDGVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLITRQEGNILS
VHSVAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQW
VAQMDLPVGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSA
LEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV
LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLVS
SE

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=772331 QRX37_RS18685 WP_252492062.1 3810222..3811430(-) (pilQ) [Escherichia coli strain 980-2]
ATGCTGATACCCGGCGTACAGGCGGCAAAGCCGCAAAAAGTGACACTGATGGTGGATGGCGTTCCGGTAGCTCAGGTGTT
GCAGGCGCTGGCTGAACAGGAGAAGTTGAACCTGGTGGTGTCGCCAGACGTCAGCGGTACGGTGTCGTTACATCTAACAG
ATGTTCCCTGGAAGCAGGCACTACAAACTGTAGTGAAAAGCGCCGGACTGATAACGCGGCAGGAAGGCAATATTCTCTCG
GTGCATTCCGTTGCCTGGCAGAATGACAATATCGCCCGCCAGGAGGCGGAGCAGGCGCGGGCGCAGGCAAATCTGCCGCT
GGAAAATCGCAATATTACTCTGCAATACGCCGACGCGGGAGAACTGGCGAAAGCGGGGGAGAAGCTACTGAGTGCCAAAG
GGAGTATGACCGTCGATAAACGCACCAATCGCCTTTTGCTGCGAGATAACAAAACGGCGTTAAGCGCGCTTGAACAGTGG
GTAGCGCAAATGGATCTGCCGGTCGGGCAGGTTGAGCTGTCGGCGCATATTGTCACCATTAATGAAAAAAGTTTGCGTGA
GTTAGGCGTGAAATGGACGTTGGCTGATGCGCAACAAGCTGGTGGCGTTGGGCAAGTCACCACGCTTGGCAGCGACCTCT
CCGTAGCGACGGCGACAACGCATGTCGGTTTTAACATTGGACGCATCAACGGACGTTTACTGGATCTTGAGCTTTCCGCG
CTCGAACAAAAACAGCAGCTGGATATTATCGCCAGTCCGCGTCTGCTGGCCTCACATCTTCAGCCTGCCAGCATTAAACA
GGGGAGCGAAATTCCATATCAGGTTTCCAGCGGGGAAAGTGGCGCGACGTCGGTGGAATTTAAAGAGGCAGTCCTGGGGA
TGGAGGTCACGCCCACGGTGTTACAAAAAGGTCGCATCCGGCTGAAATTACACATCAGCCAGAACGTTCCGGGGCAGGTG
CTACAGCAGGCAGATGGCGAAGTGCTGGCGATTGATAAGCAAGAGATCGAAACGCAGGTCGAGGTCAAAAGCGGAGAAAC
GTTGGCGCTGGGCGGCATTTTTACCCGTAAAAATAAATCGGGTCAGGATAGCGTACCGTTGCTTGGCGACATTCCCTGGT
TCGGGCAATTATTTCGTCATGACGGAAAAGAAGATGAACGACGCGAGTTAGTGGTGTTTATCACGCCACGACTGGTTTCC
AGTGAGTAA

Domains

Predicted by InterProScan.

Bacterial type II and III secretion system protein (Secretin)

(240-399)

Bacterial type II/III secretion system short domain (Secretin_N)

(110-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

38.005

100

0.398
  comE Haemophilus influenzae Rd KW20

37.678

100

0.396
  comE Haemophilus influenzae 86-028NP

39.447

99.005

0.391
  pilQ Vibrio cholerae strain A1552

37.53

100

0.386
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

37.53

100

0.386
  pilQ Pseudomonas aeruginosa PAK

33.945

100

0.368
  comE Glaesserella parasuis strain SC1401

36.453

100

0.368